Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (EC 6.3.2.10) from Sphingobium sp. HT1-2

 Score = 63.9 bits (154), Expect = 1e-14
 Identities = 104/428 (24%), Positives = 173/428 (40%), Gaps = 55/428 (12%)

Query: 40  AALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQG-ANLVLAEADAQHLNGWV 98
           A   ++ +  DSR + +GD FVA++G   DG +F+DKA AQG A  +++E         V
Sbjct: 20  APFAVSGVAFDSREVGAGDLFVAMKGETTDGHKFVDKAFAQGAAGAIVSEP--------V 71

Query: 99  EYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKA 158
           +Y    P + +A+    L  L        + ++IGVTG+ GKT   + +   LE      
Sbjct: 72  DY----PHVLVADSAAALEALGRASRKRSNAKIIGVTGSVGKTGTKEALFHALE------ 121

Query: 159 AVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH--GLVQGRVKK 216
                   G   +++   N  G  L +    RD     A Y   E   +  G +    ++
Sbjct: 122 ---RACPGGVHRSVKSYNNHVGVPLSLARMPRD-----AAYGVFEMGMNHAGELAALTRQ 173

Query: 217 LHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQ 275
           +     + + ++  H+++ GT E  A AK  +F        A+I  D    A    +  +
Sbjct: 174 VRPNVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATLYGKAER 233

Query: 276 AIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEG---ELHAPLIGEFNACNLLLA 332
                L    +    I+ R+   A  G TL   +  G      + AP  G+    N L  
Sbjct: 234 HADHILTFGFSPEADIFVRDTVPAPGGGTLVTAALPGVELCFTVGAP--GDHWVSNSLAV 291

Query: 333 LATLLSLGFEKSA---LLATAPKLRPVLGRMELFQREQKAKMVVD--YAHTPDALEKALR 387
           LA + +LG + +A    LA  P L P  G   +        +++D  Y   P ++   L+
Sbjct: 292 LAAVEALGGDLAAAGLALAEMPGL-PGRGARRILPVAGGEALLIDESYNANPLSMAATLK 350

Query: 388 ALRVHCAGQLWAIVGCGGDRDRGKR------PMMAAIAEQFADRVILTDDNPRSESPQAI 441
            L    A +  A++  GG R+ G R       +   ++E   D  IL  +        A 
Sbjct: 351 QLGREQADRRIAVL--GGMRELGSRSTELHAALSQPLSENGVDYAILVGEE------MAP 402

Query: 442 VADMVAGL 449
           +AD + GL
Sbjct: 403 LADALGGL 410