Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 496 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Pseudomonas putida KT2440

 Score =  373 bits (958), Expect = e-108
 Identities = 205/475 (43%), Positives = 290/475 (61%), Gaps = 13/475 (2%)

Query: 43  VITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRA 102
           +I  L LDSR ++ GD F+A+ G  VDGR+ I  A+A+GA  V  E    ++    +   
Sbjct: 18  LIRELTLDSRSVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGANVLPLTD--- 74

Query: 103 GVPVIYLAELGQHLSELAGRLYGGHHNQL--IGVTGTNGKTTITQLIAQWLELLGHKAAV 160
            VP+I +  L   LS++AGR YG    QL  +GVTGTNGKT++TQL+AQ L+LLG +  +
Sbjct: 75  -VPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGL 133

Query: 161 MGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFV 220
           +GT G GF   L+    TT + + +Q+TL DL + GA+  A+E SSH L QGRV  L F 
Sbjct: 134 IGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGARAVAMEVSSHALEQGRVAALEFD 193

Query: 221 AGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVS 280
             V +NLSRDHLDYHG+MEAY AAK  LF+  + +  ++N+DD  G +      +   V 
Sbjct: 194 IAVMTNLSRDHLDYHGSMEAYEAAKAKLFAWPSLRCQVVNLDDDFGRRLAADFARRPSVD 253

Query: 281 LV-------TKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLAL 333
            +       +  +   +++ RE  +++ G+     ++ GE  L + L+G FN  N+L A+
Sbjct: 254 HIETRLLSYSLESPEASLFCREAVFSDDGVRATLVTAQGERILRSQLLGRFNLSNMLAAV 313

Query: 334 ATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDALEKALRALRVHC 393
           ATLL+L +    +L   P+L+  +GRM+      K  +VVDYAHTPDALEK L ALR H 
Sbjct: 314 ATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDALEKVLEALRPHA 373

Query: 394 AGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTYPE 453
            G+L  + GCGGDRDRGKRP+MA +AE+ ADRV++TDDNPR+E P  I  D+  G T P+
Sbjct: 374 HGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPSRIFDDIRPGFTRPD 433

Query: 454 RAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYSDRETAQQLL 508
                  R +A ++ +  A A D+I+LAGKGHEDYQ +  E   +SD   A++ L
Sbjct: 434 DVEFVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEINGERHDFSDLTEAEKAL 488