Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 98.2 bits (243), Expect = 6e-25
 Identities = 99/376 (26%), Positives = 156/376 (41%), Gaps = 30/376 (7%)

Query: 42  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 101
           L  T +  D+R ++ GD FVA++G   D   F+ +A  QGA   +A        G  E  
Sbjct: 22  LPFTRVHTDTRTLQPGDLFVALKGERFDAHDFLPQAAGQGALAAIAH------QGLAE-- 73

Query: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKA--A 159
           AG+P + + +  + L EL+ R        LI VTG+NGKTT+TQ+IA  L     +A  A
Sbjct: 74  AGLPGVEVPDTRRALGELSRRWRSQFDLPLIAVTGSNGKTTVTQMIAAILRAAAGEAAHA 133

Query: 160 VMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHF 219
             G   N     L     T  + L +     +     A+  AL   +  LV         
Sbjct: 134 TQGNFNNDIGVPLTLLRLTAAHRLSVVELGMNHPGEIAELAALALPTVALV--------- 184

Query: 220 VAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN-AIINVDDAVGAQWVKQLPQAIG 278
                +N  R+HL++  T+EA A     +         A+   DD     W ++   A  
Sbjct: 185 -----NNAQREHLEFMATVEAVARENGQVIQALGADGVAVFPSDDTYTPLW-REFAGARR 238

Query: 279 VSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLS 338
           V   +  + +  + A +  +AE    L+F S  GE  +   + G  N  N L A A  L+
Sbjct: 239 VITFSDRDGSADVKALKTEWAEGAWALSFVSPLGEATVRLRIAGRHNVRNALAATACALA 298

Query: 339 LGFEKSALLATAPKLRPVLGR---MELFQREQKAKMVVD-YAHTPDALEKALRALRVHCA 394
            G    A++       PV GR   + L   ++   ++ D Y   PD++  A+  L    A
Sbjct: 299 AGVPLDAVVRGLDAFEPVGGRSRALALRVNDRHVTLIDDTYNANPDSVRAAIDVLAELPA 358

Query: 395 GQLWAIVGCGGDRDRG 410
            +L  +   G   ++G
Sbjct: 359 PRLLVLGDMGEVGEQG 374