Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-di aminopimelate ligase from Methylophilus sp. DMC18

 Score =  326 bits (836), Expect = 1e-93
 Identities = 193/464 (41%), Positives = 265/464 (57%), Gaps = 12/464 (2%)

Query: 50  DSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLN-GWVEYRAGVPVIY 108
           DSR ++    F+A  G   DGR +I  AIA+G N V+ +++    N  W  +   +P   
Sbjct: 16  DSRKVEKHGLFLAYPGQHSDGRDYIADAIAKGVNTVIWDSEGFDWNPDWQVHNIAIP--- 72

Query: 109 LAELGQHLSELAGRLYGGHHNQL--IGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 166
             EL   +  +A + Y     QL  +GVTGTNGKTT+T  +AQ    L  ++AV+GT GN
Sbjct: 73  --ELKYQVGHIASQFYKNPSEQLWCVGVTGTNGKTTVTHWLAQAYRFLQRQSAVIGTLGN 130

Query: 167 GFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGVFSN 226
           G L  L+P  NTT   +++Q  L +      Q  A+E SSHGL QGRV  + F   VF+N
Sbjct: 131 GVLEDLQPTQNTTPGPVELQNMLANFVLDQVQMVAMEVSSHGLDQGRVNGVAFDVAVFTN 190

Query: 227 LSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSLVTKPN 286
           L+RDHLDYH TMEAY AAK  LF       A+IN+DDA GA  + +L +  G ++++   
Sbjct: 191 LTRDHLDYHLTMEAYQAAKRKLFDWQTLSAAVINLDDAFGASLIAELRKQ-GKTVISYGL 249

Query: 287 TAQA-IWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGFEKSA 345
             +A I A  V    +G  +   +  G GE+    +G+FN  N L  L +LL+      A
Sbjct: 250 QPEADICATAVTMHATGFEIKVRTPHGIGEVQLHALGQFNVYNALAVLGSLLANQVALPA 309

Query: 346 LLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDALEKALRALRVHCAGQLWAIVGCGG 405
            L     L PV GRM++F       +VVDYAHTPDALEKAL  LR+   G+L  + GCGG
Sbjct: 310 ALQAVSGLVPVAGRMQMFGGGDLPLVVVDYAHTPDALEKALHTLRMQTRGKLTCVFGCGG 369

Query: 406 DRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTYPERAHIEHHRFQAA 465
           DRD GKR  M  IA++ AD V++T+DNPRSE+P AI+A +  G+     A +E  R +A 
Sbjct: 370 DRDSGKRSEMGRIADELADLVLMTNDNPRSENPYAIIAAIAEGM--HREAAVETDRAKAI 427

Query: 466 SYALQHAGAQDIILLAGKGHEDYQVLANETIHYSDRETAQQLLE 509
           + A+  AG  D++L+AGKGHEDYQ +      +SD E  Q  L+
Sbjct: 428 ALAVSQAGKGDVVLVAGKGHEDYQEIQGIRYPFSDAEWVQSALK 471