Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Alteromonas macleodii MIT1002

 Score = 73.2 bits (178), Expect = 2e-17
 Identities = 74/339 (21%), Positives = 139/339 (41%), Gaps = 29/339 (8%)

Query: 40  AALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVE 99
           A + ++ +  D+R ++ G  ++A++G   +G  FI  A   GA+ V+A  D         
Sbjct: 22  ADVEVSAVSTDTRTLEDGAVYLALKGPNFNGHDFISTAEKAGASAVIASEDVA------- 74

Query: 100 YRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAA 159
               +PVI + +  + L  L   +      + I +TG++GKTT+ ++ A  LE  G+   
Sbjct: 75  --TSLPVIMVEDTKEALGLLGAAVKAYVAPKTIAITGSSGKTTVKEMCAAILERRGN--- 129

Query: 160 VMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH--GLVQGRVKKL 217
           V+ T GN              N + +  TL  L E   +Y  +E  ++  G +      +
Sbjct: 130 VLATNGN------------FNNDIGVPLTLLRL-EPQHEYAVMELGANHIGEIAYTTNLV 176

Query: 218 HFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN-AIINVDDAVGAQWVKQLPQA 276
                   N +  HL+  G++   A AK  +F        A++NVD      W  +L Q 
Sbjct: 177 KPDVATIVNAAASHLEGFGSLLGVARAKSEIFKGLGSDGVAVVNVDSQFAEFWQGKLKQT 236

Query: 277 IGVSLVTKPNTAQAIWAREVAYAESG-ITLNFESSWGEGELHAPLIGEFNACNLLLALAT 335
             ++   +        A ++     G    +     G+  +   + G  N  N L+A A 
Sbjct: 237 KTLTFSPQQKNDADFRAEDITIGLDGCAAFHLVCPRGDMSIQLTIPGVHNVGNALVAAAL 296

Query: 336 LLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKMVVD 374
            L +G     +      ++ V GR+ + Q  ++ +++ D
Sbjct: 297 TLQVGATLENVRDGLLAMKQVSGRLNVKQLTEQVRLLDD 335