Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 486 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase from Xanthobacter sp. DMC5

 Score =  199 bits (506), Expect = 2e-55
 Identities = 141/465 (30%), Positives = 221/465 (47%), Gaps = 24/465 (5%)

Query: 6   LSQLSSVLNARLIGEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVAL 65
           ++++++ + A + G  R  + +S DSR++     F A+ GE  D H +  +A+  GA A 
Sbjct: 18  VAEMAAAMGAEVRGTPRDATGISIDSRSLAPGDAFFAIAGENSDGHAYVGKALEAGASAC 77

Query: 66  LVERE----LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASI 121
           +V R+      A+   LVV D    L  L     A+ +   VA+TGS GKTT KE +   
Sbjct: 78  VVARDKLDQFPADAPLLVVDDVLAGLTDLARASRARSRAGIVAVTGSVGKTTTKEALRIA 137

Query: 122 LSQKGQVLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALV 181
           L   G+   +  ++NN  GVPL+L R   E  Y V E+G NH GEI     LV+P VA++
Sbjct: 138 LGADGETHASAASYNNHWGVPLSLARLPREARYGVFEIGMNHPGEITPLVKLVRPQVAII 197

Query: 182 NNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKA---VLADKTVKT 238
             V   H+  F  +D +  AK EI+QGL+ G   ++NLD+      KA    L    + T
Sbjct: 198 TTVEPVHIAQFSGIDEIADAKAEIFQGLEPGGAVVLNLDNPLFPRLKAAAEALGIDRIVT 257

Query: 239 FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGV----ELGIMGQHNVANALAAAALS 294
           F  T         DVRL    + S+  V     +G     ++G+ G+H V N LA  A +
Sbjct: 258 FGET------AGADVRLKEAALQSYCSVGVADVMGTPVTFKVGMPGRHIVQNMLAVLAAA 311

Query: 295 LEMGASLAEIGQGLAHLSKVKGRVDMAQLR---DDITLIDDSYNASVPAMKAAVELLGSF 351
             +GA LA +G  L+ +    GR    +L+      TL+D+SYNA+  +M+AA+++L   
Sbjct: 312 KLVGADLALVGLALSRMKAPPGRGVALRLQVKGGQATLLDESYNANPASMRAALDVLSRT 371

Query: 352 ----SAVRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHF 407
                  R  +LG+M ELG +  A H ++ E       + V   G     +         
Sbjct: 372 PVGPRGRRIAVLGDMLELGPDGEAHHAELAEAIRTAKIDQVFCCGPQMHALWQALPSERR 431

Query: 408 ATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452
             +    + +E  +         L+VKG+N + M  +  +L E+F
Sbjct: 432 GGYAIHASHLEPMVASAIRGGDTLMVKGSNGSRMGPLVKSLAERF 476