Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 518 a.a., UDP-N-acetylmuramoyl-dipeptide--2,6-diaminopimela te ligase (EC 6.3.2.13) from Variovorax sp. SCN45

 Score = 94.7 bits (234), Expect = 6e-24
 Identities = 110/392 (28%), Positives = 162/392 (41%), Gaps = 56/392 (14%)

Query: 5   MLSQLSSVLNARLIGEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVA 64
           ML+  S  L A  + E    +A+  DSRA+ A  +FVA  G   D     + A+  GA  
Sbjct: 1   MLTFTSPQLVAAWLKERAPQAAMHADSRAVGAGDIFVAWPGAATDGRKHVASALAQGAAV 60

Query: 65  LLVERE------LDAECSQLVVADTKQALGQLGS--WVHAQCQTPTVAITGSCGKTTVKE 116
            LVE E       D +   +     K A G + S  + +       +A+TG+ GKT+   
Sbjct: 61  CLVEHEGVEPFGFDGDERIVSYPGLKAATGPIASAFYDNPSALLDVLAVTGTNGKTSTAW 120

Query: 117 MVASILSQKG-----QVLYTQGNFNND------------IGVPLTL-------------- 145
            +A  LS        +V+   G    D            +GVP  L              
Sbjct: 121 WLAESLSTLRAAGGVRVMKPDGTMQRDAPSPCAVMGTLGVGVPPELTYTGLTTPDPVMMQ 180

Query: 146 --LRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGVKRAKG 203
             LRS  E  +    + A+ +G         +  VA+  N    HL+  GSMD   +AK 
Sbjct: 181 RELRSLVERGFGACAIEASSIGIAERRLDGAQIAVAVFTNFTQDHLDYHGSMDAYWQAKA 240

Query: 204 EIYQ--GLQAGAVAIVNLDSNGGDYWKAVLADK-----TVKTFSATDHNADFYPRDVRLN 256
           E+++  GL+A   A++N+D   G    A L D       V T SA    A    RD+  +
Sbjct: 241 ELFRWPGLRA---AVINIDDTHGASLCANLIDAGIGALDVWTVSAGGKPARLVARDIGYD 297

Query: 257 ALGIASFTLVTPVGEVGVE---LGIMGQHNVANALAAAALSLEMGASLAEIGQGLAHLSK 313
           A G+  F+ V   G   VE    G++GQ+NVAN L        +G +LA+     A+L+ 
Sbjct: 298 AQGL-QFS-VAEHGTAAVERLSTGLIGQYNVANLLGVLGTLRALGLTLAQAAAACANLTS 355

Query: 314 VKGRVDMAQLRDDITLIDDSYNASVPAMKAAV 345
           V GR+D A   D   L    Y  +  A+  A+
Sbjct: 356 VPGRMDRAGTGDGAPLAVVDYAHTPDALDKAL 387