Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase (EC 6.3.2.10) from Variovorax sp. SCN45

 Score =  235 bits (600), Expect = 2e-66
 Identities = 161/446 (36%), Positives = 235/446 (52%), Gaps = 12/446 (2%)

Query: 15  ARLIGEDRAVSA-VSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDA 73
           +RL+G+   V A V TD+R + A  LFVAL GERFDA++F ++A   GAVA +    L+A
Sbjct: 21  SRLVGDASTVIARVHTDTRTLAAGDLFVALKGERFDANEFLAEAKKQGAVAAIAHHGLEA 80

Query: 74  E-CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASIL----SQKGQ- 127
              + L V D+  ALG LG+   AQ   P +A+TGS GKTTV +M+A++L    + +G+ 
Sbjct: 81  AGLAGLEVPDSLLALGALGAGWRAQFTLPLIAVTGSNGKTTVTQMIAAVLFAARADRGES 140

Query: 128 VLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAA 187
            L T GNFNN+IGVPLTLLR   +   AV+ELG NH GEIA   A+ +P +ALVNN    
Sbjct: 141 ALATAGNFNNEIGVPLTLLRLRAQHQRAVLELGMNHPGEIARLAAMSRPTIALVNNAQRE 200

Query: 188 HLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVL-ADKTVKTFSATDHNA 246
           H E   +++ V      ++  L     A+          W  +  A  + +  +  +H  
Sbjct: 201 HQEFMATVEAVAVENAAVFAVLPDDGTAVFPYGDAFTSLWTDMAHAGGSRRCMTFGEHQD 260

Query: 247 DFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSLEMGASLAEIGQ 306
                D      G  +  + TP+G     L I G+HNV NALAA A +L  G S   I  
Sbjct: 261 ADISLDGAEWKQGAWAVRIRTPIGSFDARLHIAGRHNVVNALAATACALAAGVSTDIIAA 320

Query: 307 GLAHLSKVKGRVDMAQ--LRDD--ITLIDDSYNASVPAMKAAVELLGSFSAVRWLILGNM 362
           GL+    VKGR   ++  L D   +TL+DDSYNA+  ++ AA+++L +    R L+LG+M
Sbjct: 321 GLSAFEPVKGRSRASEIVLADGRAVTLVDDSYNANPDSVIAAIDVLAALPGPRLLVLGDM 380

Query: 363 AELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIE 422
            E+G+ S   H +VG+ A   G E V T+G          +G     H +    +   + 
Sbjct: 381 GEVGERSPEFHAEVGDWARQRGIEAVYTFGNATAHTVAAFRGDADGRHFNEFDALGAAVL 440

Query: 423 QQQGRTQVLLVKGANSAGMSKIAAAL 448
            +      +LVKG+ S  M ++  A+
Sbjct: 441 ARLPHVGSVLVKGSRSMKMERMVQAI 466