Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., UDP-N-acetylmuramoyl-dipeptide--2,6- diaminopimelate ligase (EC 6.3.2.13) from Sphingobium sp. HT1-2

 Score = 85.9 bits (211), Expect = 3e-21
 Identities = 96/400 (24%), Positives = 164/400 (41%), Gaps = 43/400 (10%)

Query: 19  GEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECS-Q 77
           G D +V+  + D+R +    +F A  G R +  DF + AV  GAVA++   E   E +  
Sbjct: 19  GLDTSVTGFAIDNRKVAPGTIFGAFQGLRVNGEDFIADAVKAGAVAIVARPEAKVEGAVH 78

Query: 78  LVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNN 137
           +  A+ ++ L QL +   A     TVA+TG+ GKT+  E+   +    G    + G    
Sbjct: 79  IADANPRRLLAQLAARYFAPFPDVTVAVTGTNGKTSTVELARQLWRMLGHKSASIGTLGV 138

Query: 138 DIGVPLTLLRSTTED----------------DYAVIELGANHVGEIAYTTALVKPDVALV 181
              V       TT D                 +A  E  ++ + +  Y T  +       
Sbjct: 139 TTSVDQVSTGLTTPDIVTFLANMSGLKREGITHAAFEASSHGLDQ--YRTEGLPVAAGAF 196

Query: 182 NNVAAAHLEGFGSMDGVKRAKGEIYQGLQA-GAVAIVNLDSNGGDYWKAVLADKTVKTFS 240
            N++  HL+  G MD    AK  ++  +   G  A++  D    D W    +DK ++   
Sbjct: 197 TNLSRDHLDYHGDMDSYFDAKMRLFDEVVGDGGAAVIWAD----DEW----SDKAIQR-- 246

Query: 241 ATDHNADFYPRDVRLNALGIASFTLVTPVGEV----------GVELGIMGQHNVANALAA 290
           AT          V+  AL +A+ T  T +G+            V L ++G +  ANAL A
Sbjct: 247 ATKRGLRVLSVGVQGQALRLANRT-PTQLGQTLEIEADGKIYKVNLPLIGAYQAANALTA 305

Query: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGS 350
           A L +  G   A++ + L  +  V+GR++ A +      +   Y  +   ++AA+E L  
Sbjct: 306 AGLVIATGGDTAKVLELLGRVQPVRGRLERAVISKAGAPVYVDYAHTPDGLRAAIEALRP 365

Query: 351 FSAVRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390
            +  R  ++      GD        +G+ AA      ++T
Sbjct: 366 HT--RGKLIALFGAGGDRDAGKRPLMGKVAADLADHVIVT 403