Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (EC 6.3.2.10) from Sphingobium sp. HT1-2

 Score =  209 bits (532), Expect = 2e-58
 Identities = 147/434 (33%), Positives = 217/434 (50%), Gaps = 11/434 (2%)

Query: 23  AVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVAD 82
           AVS V+ DSR + A  LFVA+ GE  D H F  +A   GA   +V   +D     ++VAD
Sbjct: 23  AVSGVAFDSREVGAGDLFVAMKGETTDGHKFVDKAFAQGAAGAIVSEPVDYP--HVLVAD 80

Query: 83  TKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQK--GQVLYTQGNFNNDIG 140
           +  AL  LG     +     + +TGS GKT  KE +   L +   G V  +  ++NN +G
Sbjct: 81  SAAALEALGRASRKRSNAKIIGVTGSVGKTGTKEALFHALERACPGGVHRSVKSYNNHVG 140

Query: 141 VPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGVKR 200
           VPL+L R   +  Y V E+G NH GE+A  T  V+P+VA+V  +A AH+E FG+ + +  
Sbjct: 141 VPLSLARMPRDAAYGVFEMGMNHAGELAALTRQVRPNVAIVTAIAPAHIEFFGTEEKIAE 200

Query: 201 AKGEIYQGLQAGAVAIVNLDSN--GGDYWKAVLADKTVKTFSATDHNADFYPRDVRLNAL 258
           AK EI++GL+ G  A++  DS      Y KA      + TF  +   AD + RD      
Sbjct: 201 AKAEIFEGLEPGGTAVIPYDSPHVATLYGKAERHADHILTFGFSP-EADIFVRDTVPAPG 259

Query: 259 GIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSLEMGASLAEIGQGLAHLSKVKGRV 318
           G    T   P  E+   +G  G H V+N+LA  A    +G  LA  G  LA +  + GR 
Sbjct: 260 GGTLVTAALPGVELCFTVGAPGDHWVSNSLAVLAAVEALGGDLAAAGLALAEMPGLPGRG 319

Query: 319 DMAQL---RDDITLIDDSYNASVPAMKAAVELLGSFSAVRWL-ILGNMAELGDESLALHQ 374
               L     +  LID+SYNA+  +M A ++ LG   A R + +LG M ELG  S  LH 
Sbjct: 320 ARRILPVAGGEALLIDESYNANPLSMAATLKQLGREQADRRIAVLGGMRELGSRSTELHA 379

Query: 375 QVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVK 434
            + +  +  G ++ +  G++   ++D   G     H          I ++      +LVK
Sbjct: 380 ALSQPLSENGVDYAILVGEEMAPLADALGGLVAFDHVPDAASATDLINKEMRAGDAILVK 439

Query: 435 GANSAGMSKIAAAL 448
           G+N  G+S++ AAL
Sbjct: 440 GSNGIGLSRLVAAL 453