Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 513 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase (EC 6.3.2.13) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 84.7 bits (208), Expect = 6e-21
 Identities = 100/386 (25%), Positives = 158/386 (40%), Gaps = 50/386 (12%)

Query: 21  DRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERE------LDAE 74
           +R V A+  DSR + A   FVA  G   D   F + A+  GAVA LVE++       D E
Sbjct: 16  ERGVRALHCDSRRVGAGDAFVAWPGAATDGRRFVAGALQAGAVAALVEQDGAQAYGFDDE 75

Query: 75  CSQLVVADTKQALGQLGSWVHA--QCQTPTVAITGSCGKTTVKEMVASILS--------- 123
              + V   K + G +    H         VAITG+ GKT+     A +LS         
Sbjct: 76  -RVVAVPGLKASAGAIAGAFHGTPSAALDMVAITGTNGKTSTAWWTAQLLSFCAMPCAVV 134

Query: 124 ------------QKGQVLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTT 171
                       Q    L   G    D  +    LR   +       + A+ +G +    
Sbjct: 135 GTLGMGRPPRPGQADSPLVATGLTTPDPVMLQAELRRFVDSGLKACAVEASSIGIVEGRL 194

Query: 172 ALVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQ--GLQAGAVAIVNLDSNGGDYWKA 229
              +  VA+  N    HL+  GSM+    AK E++   GL   A A+VN+D   G    A
Sbjct: 195 NATQLRVAVFTNFTQDHLDFHGSMEAYWTAKAELFDWPGL---ASAVVNIDDARGADLAA 251

Query: 230 VLADK-----TVKTFSATDHNADFYPRDVRLNALGIA-----SFTLVTPVGEVGVELGIM 279
            LA +     TV   +     A  + +D+     G+A            + +  + L ++
Sbjct: 252 TLAQRGLDLWTVAIEAGHHGRARLFAQDLSFTHSGMALQVGERDARGRTLAQHALSLPLV 311

Query: 280 GQHNVANALAAAALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLR-DDITLIDDSYNASV 338
           G++NV+N L   A +  +G +LA+  Q  A L+ V GR++ A     D  L+   Y  + 
Sbjct: 312 GRYNVSNLLCVLASARALGVALADAVQACAALTPVPGRMEQAAAGVSDQPLVLVDYAHTP 371

Query: 339 PAMKAAVELLGSFSAVR----WLILG 360
            A++ A++ L   +  R    W+++G
Sbjct: 372 DALEKALQALQPLARQRGGALWVVVG 397