Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8) from Kangiella aquimarina DSM 16071

 Score = 58.2 bits (139), Expect = 6e-13
 Identities = 84/351 (23%), Positives = 139/351 (39%), Gaps = 45/351 (12%)

Query: 13  LNARLIGEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELD 72
           L  ++ G D   S V+   + + A+      +G R D     +  V   A+         
Sbjct: 40  LGYQVSGSDLRESKVTERLKTLGADIF----IGHRSDNIRDVNVVVASTAIPKTNPELEA 95

Query: 73  AECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQV---- 128
           A   ++ V    + L +L  + H       VA+ G+ GKTT   ++ASI ++ G      
Sbjct: 96  AREHRIPVVPRAEMLAELMRFRHG------VAVAGTHGKTTTTSLIASIFAEGGLDPTFV 149

Query: 129 ---LYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVA 185
              L      N  +G     +    E D + + L               +P V++V N+ 
Sbjct: 150 IGGLLNSAGSNARLGTSRFFIAEADESDASFLHL---------------QPMVSVVTNIE 194

Query: 186 AAHLEGFGS-MDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKTVKTFSATDH 244
           A H++ +G     ++    +    L    +A++ +D          +   TV T+  ++ 
Sbjct: 195 ADHMDTYGGDFKNLENNFIDFLHNLPFYGLAVLCIDDKTVQEIMPRITRPTV-TYGFSE- 252

Query: 245 NADFYPRDVRLNALGIASFTLVTP---VGEVGVELGIMGQHNVANALAAAALSLEMGASL 301
           NAD   R +     G  S   V      GE+ + L + G+HNV NALAA A++ E G S 
Sbjct: 253 NADV--RAIEFTQSGTKSHFKVIRRDHEGELEITLNLPGRHNVQNALAAIAVASEDGVSD 310

Query: 302 AEIGQGLAHLSKVKGRVDM-AQLRDD---ITLIDDSYNASVPAMKAAVELL 348
           A I + LA    +  R  M      D   ITL+DD Y      + A +E +
Sbjct: 311 ASIQKALAEFGGIGRRFQMYGDFEVDGKTITLLDD-YGHHPSEVMATIEAM 360