Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 820 a.a., alanine racemase from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  136 bits (342), Expect = 3e-36
 Identities = 115/459 (25%), Positives = 206/459 (44%), Gaps = 23/459 (5%)

Query: 6   LSQLSSVLNARLI--GEDRAVSAVSTDSRAI--PAEALFVALVGERFDAHDFASQAVTGG 61
           L +L  + N +L+  G   +V+A+STDSR I    + LFVAL G + + HD+   A + G
Sbjct: 7   LQELLLITNGQLLHQGHHPSVTAISTDSRKIYHGKQTLFVALKGFKVNGHDYLMDAFSKG 66

Query: 62  AVALLVERELD----AECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEM 117
               +VE +       +C+ +VV    +AL  L  W   Q     + ITGS GKT +KE 
Sbjct: 67  VRTFIVENDKHISPLTDCTIIVVKSALEALQALAKWNRNQFSGVVIGITGSNGKTIIKEW 126

Query: 118 VASILSQKGQVLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPD 177
           +  IL+ +  +  +  ++N+  GVPL++         A+IE G +  GE+A    +++P+
Sbjct: 127 LGQILASRFDIAKSPKSYNSQTGVPLSIFGIENHHKAAIIEAGISLPGEMAKLQTIIQPN 186

Query: 178 VALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKTVK 237
           + ++ N+  AH EGF S       K  +++  Q     IV    +   +        + +
Sbjct: 187 IGIMTNIGTAHAEGFSSQAEKLHEKLLLFKDAQ----LIVYRKDHAAIHRALTDQFPSDR 242

Query: 238 TFSATDHNADFYPRDVRLNALGIASFTLVTP-VGEVGVELGIMGQHNVANALAAAALSLE 296
             S +D     Y    +    G +  TL+ P +G          + ++ N       +L 
Sbjct: 243 LVSWSDQPGGDYTLSTKKEKEG-SKLTLIKPDLGLFTFHSHFTDEASLENLRHTIVAALV 301

Query: 297 MGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSF--SAV 354
           +G S  +I Q +  L  V+ R+ +        LIDD+YN  +  +  A+E L S      
Sbjct: 302 LGLSETQIQQSIPVLDTVEMRLTLKAGIHQCLLIDDTYNNDLAGLDIALEFLNSQRPKKR 361

Query: 355 RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVIS--DLCQGHHFATHQD 412
           + LIL ++ + GD+S +++  V    + +  + V   G D   +     C  + F     
Sbjct: 362 KILILSDLLQAGDKS-SVYDSVSNLISHYQLDMVFAVGSDIGQLKAPPSCTVNFFRDTAH 420

Query: 413 MMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEK 451
           ++  +  +  Q      ++L+KGA      ++  AL+E+
Sbjct: 421 LLEKLPTYALQD----DLILIKGARIFQFERVVDALQER 455



 Score = 28.5 bits (62), Expect = 9e-04
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 172 ALVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVL 231
           AL   ++ L+ N    H     S+  +     +IY G Q   VA+     NG DY     
Sbjct: 4   ALTLQELLLITNGQLLHQGHHPSVTAISTDSRKIYHGKQTLFVALKGFKVNGHDYLMDAF 63

Query: 232 ADKTVKTF 239
           + K V+TF
Sbjct: 64  S-KGVRTF 70