Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Alteromonas macleodii MIT1002

 Score = 74.3 bits (181), Expect = 9e-18
 Identities = 90/364 (24%), Positives = 154/364 (42%), Gaps = 56/364 (15%)

Query: 21  DRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVV 80
           D  +  ++ DSR +     F+A+ G   D  DF  QA++ GA  +L + E  +   Q+ +
Sbjct: 23  DIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILAQTEDSSAHGQMEM 82

Query: 81  AD---------TKQALGQLGSWVH---AQCQTPTVAITGSCGKTTVKEMVASI---LSQK 125
            D           Q L  L +  +   AQ  T TVA+TG+ GKT+  +++  +   L  +
Sbjct: 83  RDHSVIISLYELPQMLSALAAAFYDYPAQKMT-TVAVTGTNGKTSTVQLLTQLKDALGTR 141

Query: 126 GQVLYTQGN--FNND-IGVPLTLLRSTTEDDYAVIELGANHV-GEIAYTT---------- 171
              + T G+  F+ D      T   +TT D   +  L A+ V  E+ +T           
Sbjct: 142 SASIGTLGSSVFDGDETQWSNTPAANTTPDAIRMQYLLADFVQSEVRHTAFEASSHALVQ 201

Query: 172 ---ALVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIV-NLDSNGGDYW 227
                VK D+A+  N+   HL+  G+M+   +AK  + Q  Q G  A+V N + +    W
Sbjct: 202 GRLGTVKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLQ--QPGLKAVVLNANDDESKKW 259

Query: 228 KAVLADKTV----------------KTFSATDHNADFYPRDVRLNA---LGIASFTLVTP 268
               ADK++                ++    +HN          NA    G  SF LV+ 
Sbjct: 260 DGA-ADKSITRIWTGIDESGLDGSGESEYLREHNNPQSRHCFATNASYHAGGCSFELVSS 318

Query: 269 VGEVGVELGIMGQHNVANALAAAALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDIT 328
            G   + L + G+ N++N L+A    L  G    ++   +  ++ V GR+++  +     
Sbjct: 319 WGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDDVVNAVNAITPVPGRMEVFPVTGAAN 378

Query: 329 LIDD 332
           L+ D
Sbjct: 379 LVVD 382