Pairwise Alignments

Query, 444 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

 Score = 77.4 bits (189), Expect = 9e-19
 Identities = 81/279 (29%), Positives = 127/279 (45%), Gaps = 42/279 (15%)

Query: 113 PVIAITGSNGKSTVTD-LSGVLANAAGVKAAVG---GNIGVPALDL-ISPDVELYVLELS 167
           PV AITGS+GK+TV + L+GVL     V A  G    + G P   L ++P+    V+EL 
Sbjct: 103 PVAAITGSSGKTTVKELLAGVLRTRGPVHATRGNLNNDFGAPLTLLELAPEHTAAVIELG 162

Query: 168 SFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAK---LRIFDHAETAVVNAD 220
           + ++     T +  K       N    H+  + G E   +AK   L   D +  AV+N D
Sbjct: 163 ASRVGEIAYTVALTKPHVVVINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGIAVLNLD 222

Query: 221 DT--QTFPDHAAHLQVVTFGVEQAA----------------QFSLAQHQGREYLFARDEA 262
           D   +T+   AA  +V+TF V  AA                 F+L   QG E++      
Sbjct: 223 DKAFETWRVRAAGRKVLTFAVLNAAADFHASNITVDARGCPSFTLHTPQGNEHV------ 276

Query: 263 VMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADNHGIKW 322
                +L+L+G HNVAN L   A   + GV+       L +   +  R       +G++ 
Sbjct: 277 -----QLNLLGNHNVANALAAAAAAYALGVSLFGIATGLGAVQPVKGRTVAQLATNGMRV 331

Query: 323 VNDSKATNVASTLAALSGLK-IEGQLYLLVGGVGKGADF 360
           ++D+   N +S  AA+  LK  EG+  L++G + +  D+
Sbjct: 332 IDDTYNANQSSICAAIDLLKSFEGRKVLVLGDIAELGDW 370