Pairwise Alignments

Query, 444 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  140 bits (353), Expect = 1e-37
 Identities = 108/334 (32%), Positives = 152/334 (45%), Gaps = 49/334 (14%)

Query: 160 ELYVLELSSFQLETTSSLKLK----AAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETA 215
           + +VLELSSFQL+ T+         AA  LNL+EDH+D +  M  Y  AK  +F      
Sbjct: 260 QAWVLELSSFQLDGTAGGDWDSVPTAATVLNLTEDHLDWHGSMAAYALAKKAVFGAQALM 319

Query: 216 VVNADDTQTFPDHAAHLQV--------------VTFGVE---QAAQFSLAQHQGREYL-- 256
           ++N DD          + V               +FG++   +A  + +    G  +L  
Sbjct: 320 LLNRDDPLVMGMQPGLVTVKVGNRNRQQSARPWASFGLDAPTRAGDWGIETVNGMTWLVR 379

Query: 257 -FARDEA-----------------VMACAELSLVGRHNVANVLTVLALLDSAGVNFRLAL 298
             A DE                  +M    L + GRHN AN L  LAL  S G      L
Sbjct: 380 ALALDETRKRGRGAEEDEETYFQRLMPVDALRIRGRHNAANALAALALASSTGAALGPML 439

Query: 299 DALKSYTGLTHRCQVVADNHGIKWVNDSKATNVASTLAALSGLKIEGQLYLLVGGVGKGA 358
             L+ Y G  HR + VA    +++ +DSK TNV +TLAA+SGL +E +L +++GG GKG 
Sbjct: 440 HGLREYRGEPHRVEPVAIIDEVEYFDDSKGTNVGATLAAVSGLGVERRLVVILGGDGKGQ 499

Query: 359 DFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSARFYDSMESIIRSIRP--------QLKS 410
           DFTPLA  LA     +   G D  +      +A    ++  +  +  P        Q + 
Sbjct: 500 DFTPLAEPLARFARAVVYIGRDAARIREAVGAALAQANVPQLDSATLPEAVALCAQQARP 559

Query: 411 GDMVLLSPACASFDQFKNFMARGDIFAQLARQYA 444
           GD VL+SPACAS D F N+M R  +F       A
Sbjct: 560 GDAVLMSPACASLDMFDNYMHRARVFVDAVHALA 593



 Score = 80.1 bits (196), Expect = 2e-19
 Identities = 60/174 (34%), Positives = 88/174 (50%), Gaps = 42/174 (24%)

Query: 12  QHVVVVGLGITGLSVVNYLRKYHPSVTVQVIDTREAPPGQEQLSS-------------DV 58
           Q V+++GLG +GL++  +  +    VTV   DTRE PP    L +             D 
Sbjct: 4   QAVLILGLGASGLAMARWCSRQGARVTVA--DTRETPPQLAVLRAECPDASFVAGPFDDA 61

Query: 59  ALHRSGWNLEWLLNADLVVTNPGIALATPEIQQVLAA-----GIPVVGDIELFAWHV--- 110
            L R+ WNL        +  +PG+A   PE+ Q +        + VVG+++LFA  +   
Sbjct: 62  LLARAEWNL--------IARSPGLA---PEVLQGVFGWAKERNVAVVGELDLFARALREL 110

Query: 111 --------DTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVPALDLIS 156
                      V+AITG+NGK+TVT L+G+L   AG+  AV GNIG   LD++S
Sbjct: 111 SQRERLPYKPKVLAITGTNGKTTVTSLTGLLLQRAGLNVAVAGNIGPALLDVLS 164