Pairwise Alignments

Query, 379 a.a., carbamoyl-phosphate synthase small subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) from Variovorax sp. SCN45

 Score =  492 bits (1267), Expect = e-144
 Identities = 248/382 (64%), Positives = 287/382 (75%), Gaps = 8/382 (2%)

Query: 5   ALLVLEDGTVFRGVSIGADGISVGEVVFNTSMTGYQEILTDPSYSQQIVTLTYPHIGNTG 64
           A+L L DGTVF+G SIGA G + GEVVFNT+MTGYQEILTDPSY QQIVTLTYPHIGN G
Sbjct: 12  AILALADGTVFQGNSIGAAGSTTGEVVFNTAMTGYQEILTDPSYCQQIVTLTYPHIGNYG 71

Query: 65  TNSEDEESTAIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILRE 124
            N ED E+  IHA GL+I+DLPL+ASNFR   +L++YL S N V IA+IDTRKLTR LR 
Sbjct: 72  VNGEDIEADKIHAAGLIIKDLPLVASNFRKTATLTEYLVSGNTVAIANIDTRKLTRHLRT 131

Query: 125 KGAQNGCIMA---GDNLDEAL---ALAKAKEFPGLKGMDLAKVVSTKEAYAWKQGSWTLE 178
            GAQNGCI+    G+ + +AL   A+A AK  P + G+DLAKVVS  + Y W +  W L 
Sbjct: 132 HGAQNGCILGLAEGETVTQALIDKAIAAAKAAPSMAGLDLAKVVSVTQTYEWTETEWKLV 191

Query: 179 G--GLPEAKADSELPYHVVAYDFGAKRNILRMLVDRGCRLTVVPAQTSAEDVLALNPDGV 236
              G P         +HVVA+D+G K+NILRM+  RG R+TVVPAQT A DVL L PDG+
Sbjct: 192 NLNGKPGYGVQITPKFHVVAFDYGVKKNILRMIAQRGARITVVPAQTPAADVLKLKPDGI 251

Query: 237 FLSNGPGDPEPCTYAIEATRVFLEKNIPVFGICLGHQILALASGAKTVKMKFGHHGANHP 296
           FL+NGPGDPEPC YAI A +  +E  IP FGICLGHQI+ALASGAKT KMKFGHHGANHP
Sbjct: 252 FLANGPGDPEPCDYAISAVKELIETGIPTFGICLGHQIMALASGAKTFKMKFGHHGANHP 311

Query: 297 VKDLDRGVVMITSQNHGFAADEATLPDNLRATHKSLFDGSLQGIHRTDKPAFSFQGHPEA 356
           VKDLD G V ITSQNHGFA DE +LP NLR TH SLFD +LQG+ RTDKPAF FQGHPEA
Sbjct: 312 VKDLDNGRVSITSQNHGFAVDEKSLPANLRPTHVSLFDNTLQGLARTDKPAFCFQGHPEA 371

Query: 357 SPGPHDAAPLFDHFIELIKQFR 378
           SPGPHD   LFD F  L+++ +
Sbjct: 372 SPGPHDIGYLFDRFTALMEKHK 393