Pairwise Alignments

Query, 540 a.a., recombinase RecF from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., AAA domain from Enterobacter asburiae PDN3

 Score = 62.4 bits (150), Expect = 3e-14
 Identities = 104/476 (21%), Positives = 192/476 (40%), Gaps = 79/476 (16%)

Query: 71  DYKKFSKLKFTSSEKNT-TIIIGNNGSGKSTILESISKCLQFLSDNIRIQNNNNY----- 124
           D + F+  K   SE+NT TII G N SGKS +L  +     F  D+  +  + +      
Sbjct: 11  DSRVFTLSKGNVSEQNTYTIITGKNSSGKSRLLSKVVNSFIFSKDDSALLASGSITSPKK 70

Query: 125 -------KFQDSEINIHSISGQTIVRCILEIENDFSFSCSLTKNREN--ISRKVSSELEE 175
                  +F    + +H+              N F +    T N  +  +++ ++S    
Sbjct: 71  VIAVSTGRFDKFPLYVHAAKNSNFKN------NYFYYGLKTTSNSPHAILTKGIASIFYG 124

Query: 176 FKALARMYQRSNELDNNTLSYPLLAYYPV-ERSVTLKRDDAVKYYERKKAKYSDKSEGLK 234
                 + +R   L      +  L + P+ + S +L     V   + K   Y +      
Sbjct: 125 MSINHGILKRLGRL------FSYLGFAPMMDISFSLN----VNLGKLKSGNYVEF----- 169

Query: 235 NAFDGTSNFNDFFSWYKEIDDIINEFKANDSITKEEIEYLLSKTDNKEKIGSLISQLLEK 294
                   +ND+    +  D +  E K N+   K  + +L     N  K           
Sbjct: 170 --------YNDYVERNRFKDPLFIE-KLNNYKEKNNLTHLEDFISNVSKYIDYTQYHYLG 220

Query: 295 KNNYNNNEDREFLIRQQKVIQESIKTFVSDIDQVKISRTPHLDMTVIKNGSEISIFNLSQ 354
           KN Y        L  ++ + +  I+  +  ID + I +   + +      ++IS+F  S 
Sbjct: 221 KNFYFKLN----LYSERDMFESEIENLLVLID-LNILQVKDIRVFGKAEKNKISLFQSSS 275

Query: 355 GEKTLIALVSDIARRLVILNPSLENPLNGYGIVLIDEIDLHLHPKWQQTIVQKLENTFPN 414
           G++ +I ++  IA           + ++   ++ IDE ++ LHPKWQ   +  L+NTF +
Sbjct: 276 GQQCMILMMMGIA-----------SSISNGSLICIDEPEISLHPKWQLEFIDLLQNTFSD 324

Query: 415 ---IQFILSTHSPLVLTTVTSEQIKIIN-ELDYRFKLLSPTSNPFGKNASDALAIMETSE 470
                F+++THSP +++ + S+   I++ E D   +L S   N F ++A   LA  E  +
Sbjct: 325 YVGCHFLIATHSPQIVSGLKSDNGYILSLEND---ELTSSVDNSF-RSADYQLA--EVFD 378

Query: 471 SPLVHSEEILALIKKYESLVKRGQ----ED---CRKTKEIKKRIESTGYTFDIADI 519
           +P   +E I  L     S VK+ +    ED     + K  K+ I S    +++  +
Sbjct: 379 APGYRNEYITKLAINLFSKVKKNKSFDVEDTALLERLKSFKENIASEDPVYELIKV 434