Pairwise Alignments

Query, 323 a.a., RNA-directed DNA polymerase from Vibrio cholerae E7946 ATCC 55056

Subject, 648 a.a., Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) from Variovorax sp. SCN45

 Score = 79.7 bits (195), Expect = 2e-19
 Identities = 62/236 (26%), Positives = 111/236 (47%), Gaps = 15/236 (6%)

Query: 41  YKVYSIPKRKAGRRTIAHPSSKLKICQRHLNAILNPLLKVHDSSYAYVKGRSIKDNALVH 100
           Y+ ++I K+  G R I+ P  ++K  Q  +   +   + VHD+ + ++ GRSI  NA  H
Sbjct: 187 YQRFTIAKKSGGERHISAPMPRMKRAQYWVLDNILAKMPVHDAVHGFLPGRSILTNAAPH 246

Query: 101 SHSAYVLKMDFQNFFNSITPTILR--------QCLIQNDILLSVNELEKLEQLIFWNPSK 152
                V+ +D ++FF SI    +R           + + + L   E    E  +      
Sbjct: 247 VGQDVVINLDLKDFFPSIGMRRVRGVFRQLGYSSQVASLLALVCTEAPTDEVQLDGRRYF 306

Query: 153 KRNGKLILSVGSPISPLISNAIMYPFDKIINDICTKHGINYTRYADDITFSTNIKNTLN- 211
              G+ +L  G+P SP+++N +    D  +     K G  YTRYADD++FS    ++ + 
Sbjct: 307 VARGERVLPQGAPTSPMLTNLLCRRLDARLAASAAKLGFRYTRYADDLSFSAGPAHSRDT 366

Query: 212 -KLPEIVEQLIIQTYAGRIIINKRKTVFSSKKHNRHVTGITLTNDSKISIGRSRKR 266
            KL   V+Q++    +  + ++  K     +   +HVTGI +  + K+S+ R   R
Sbjct: 367 AKLLWRVKQIVA---SEGLTVHPDKQQVMRRHRQQHVTGIVV--NDKLSLDRDTMR 417