Pairwise Alignments

Query, 323 a.a., RNA-directed DNA polymerase from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., Group II intron-encoding maturase from Pseudomonas putida KT2440

 Score = 51.6 bits (122), Expect = 4e-11
 Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 22/209 (10%)

Query: 40  AYKVYSIPKRKAGRRTIAHPSSKLKICQRHLNAILNPLLK--VHDSSYAYVKGRSIKD-- 95
           A +   IPK + G R +  PS   ++ Q+ L   L P+      D SY +  GRS     
Sbjct: 113 AVRAVEIPKPQGGTRQLGIPSVVDRLIQQALQQQLTPIFDPLFSDYSYGFRPGRSTHQAI 172

Query: 96  ---NALVHSHSAYVLKMDFQNFFNSITPTILRQCL---IQNDILLSVNELEKLEQLIFWN 149
               A V +   + +++D + FF+ +   IL  C+   I++  +L +     LE  I   
Sbjct: 173 EMARAHVTAGHRWCVELDLEKFFDRVNHDILMACIERRIRDKCVLRLIR-RYLEAGIMSG 231

Query: 150 --PSKKRNGKLILSVGSPISPLISNAIMYPFDKIINDICTKHGINYTRYADDITFSTNIK 207
              S ++ G      G P+SPL+SN ++   D+ +     + G  + RYADD        
Sbjct: 232 GVVSPRQEG---TPQGGPLSPLLSNILLDELDRELE----RRGHRFVRYADDANIYVRSP 284

Query: 208 NTLNKLPEIVEQLIIQTYAGRIIINKRKT 236
               ++   VE+ + +    ++ +N++K+
Sbjct: 285 RAGERVLVSVERFLRERL--KLTVNRKKS 311