Pairwise Alignments

Query, 323 a.a., RNA-directed DNA polymerase from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., hypothetical protein from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  181 bits (459), Expect = 2e-50
 Identities = 104/285 (36%), Positives = 173/285 (60%), Gaps = 16/285 (5%)

Query: 41  YKVYSIPKRKAGRRTIAHPSSKLKICQRHLNAILNPLLKVHDSSYAYVKG--RSIKDNAL 98
           Y++Y IPK+  G RTI HPS ++K  Q  L  ++   L+VH+++  Y+KG    IK NA 
Sbjct: 29  YRIYKIPKKTTGTRTIYHPSKQVKAVQYILIDLILKKLQVHNAAVGYIKGVKAPIKRNAE 88

Query: 99  VHSHSAYVLKMDFQNFFNSITPTILRQCLIQNDILLSVNELEKLEQLIFWNPSKKRNGKL 158
            H+   Y +++DF+NFF+SI+ + L++ L  + + LS+++ + LE ++F      +NG  
Sbjct: 89  QHAKFPYSIRIDFKNFFSSISFSDLKKVLENSSLELSLDDYKVLELVLF------KNG-- 140

Query: 159 ILSVGSPISPLISNAIMYPFDKIINDICTKHGIN--YTRYADDITFSTNIKNTLNKLPEI 216
            L +G+P SPLISN +M+  D+++     K   N  YTRYADDI FST+ KN      + 
Sbjct: 141 -LPIGAPSSPLISNIVMFELDELLAREALKVDSNSLYTRYADDIVFSTSKKNGCKDFLKK 199

Query: 217 VEQLIIQTYAGRIIINKRKTVFSSKKHNRHVTGITLTNDSKISIGRSRKRYISSLVFKYI 276
           ++ ++I     ++ IN  KT F S+K  R VTG+ +T   K+SIGR  K +I  L+++Y 
Sbjct: 200 LKSVLINYNHPKLTINSSKTKFMSRKSKRMVTGLIITPQGKVSIGRENKEFIKMLLYQYN 259

Query: 277 NKNLDIDEINHMKGMLAFAYNIEPIYIHRLSHKYKV---NIVEKI 318
            K L+ ++++++ G L+F  ++EP + + L  KY     N+++KI
Sbjct: 260 KKLLNPEQVSYLTGYLSFIIDVEPAFFNTLVIKYGAVVSNLLKKI 304