Pairwise Alignments

Query, 323 a.a., RNA-directed DNA polymerase from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  274 bits (701), Expect = 2e-78
 Identities = 149/311 (47%), Positives = 204/311 (65%), Gaps = 7/311 (2%)

Query: 9   LNILTTLREQLLTNNVIMPQEFERLEVRGSHAYKVYSIPKRKAGR-RTIAHPSSKLKICQ 67
           ++IL  + + LLT       E     +   + YK+Y I KR + + RTIAHPS +LK  Q
Sbjct: 1   MDILQHISDLLLTKK----SEIISFSLTAPYRYKIYKIAKRNSDKKRTIAHPSKELKFIQ 56

Query: 68  RHLNAILNPLLKVHDSSYAYVKGRSIKDNALVHSHSAYVLKMDFQNFFNSITPTILRQCL 127
           R +   L   L VH+ ++AY KG SIK NA VH H+ Y+LKMDF+NFF SITP +    L
Sbjct: 57  REITEYLTDKLPVHECAFAYKKGSSIKTNAQVHLHTKYLLKMDFENFFPSITPRLFFSKL 116

Query: 128 IQNDILLSVNELEKLEQLIFWNPSKKRNGKLILSVGSPISPLISNAIMYPFDKIINDICT 187
              +I L+ ++   LE ++F+    KRN  L LS+G+P SPLISN +MY +D  + +IC+
Sbjct: 117 RLANIDLTADDKVLLENILFFK--SKRNSNLRLSIGAPSSPLISNFVMYFWDIEVQEICS 174

Query: 188 KHGINYTRYADDITFSTNIKNTLNKLPEIVEQLIIQTYAGRIIINKRKTVFSSKKHNRHV 247
           K G+NYTRYADD+TFSTN K+ L  +P+++E ++ +   GRI IN  KTVFSSK HNRHV
Sbjct: 175 KIGVNYTRYADDLTFSTNNKDVLFDIPDMLENVLPKYSLGRIRINHEKTVFSSKGHNRHV 234

Query: 248 TGITLTNDSKISIGRSRKRYISSLVFKYINKNLDIDEINHMKGMLAFAYNIEPIYIHRLS 307
           TGITLTND+K+SIGR RKR IS+++  +IN  L  DE N + G+LAFA NIEP +   + 
Sbjct: 235 TGITLTNDNKLSIGRERKRKISAMIHHFINGKLSTDECNKLVGLLAFAKNIEPSFYKSMV 294

Query: 308 HKYKVNIVEKI 318
            KY  + + K+
Sbjct: 295 IKYGSDNIYKL 305