Pairwise Alignments

Query, 323 a.a., RNA-directed DNA polymerase from Vibrio cholerae E7946 ATCC 55056

Subject, 575 a.a., RNA-directed DNA polymerase from Dickeya dianthicola ME23

 Score =  101 bits (251), Expect = 5e-26
 Identities = 85/298 (28%), Positives = 137/298 (45%), Gaps = 37/298 (12%)

Query: 41  YKVYSIPKRKAGRRTIAHPSSKLKICQRHLNAILNPLL--------KVHDSSYAYVKGRS 92
           Y  ++I K+    R I+ P S+LK  Q  L+ +L   L        + +  S+ + + RS
Sbjct: 41  YSQFTIKKKNGSDRIISAPDSELKEIQSKLSDLLQDCLNNLRENLKEDNHFSHGFERNRS 100

Query: 93  IKDNALVHSHSAYVLKMDFQNFFNSITPTILRQCLIQNDILLSVNELEKLEQLIFWNPSK 152
           I  NA  H    +VL +D  NFF+      +R   ++N+      EL  L   I  +  K
Sbjct: 101 IITNAEKHKSKKWVLNIDLCNFFDEFNFGRVRGYFLKNNNFSLNTELSTLIAKIACHQDK 160

Query: 153 KRNGKLILSVGSPISPLISNAIMYPFDKIINDICTKHGINYTRYADDITFSTN------- 205
                  L  GSP SP+I+N I+   D+ ++++C   G  YTRYADDIT STN       
Sbjct: 161 -------LPQGSPCSPVITNLILVSLDRRLSNLCNSVGCTYTRYADDITISTNKKEFPND 213

Query: 206 -IKNTLNKLPEIVEQLIIQTYAGRIIINKRKTVFSSKKHNRHVTGITLTNDSKISIGRSR 264
            IK+   K   +  + + +  +    IN  K     KK+ + VTG+T+  +  +++ R  
Sbjct: 214 IIKDQDEKSITLNNKFLKEITSSGFKINHNKLRLLDKKNRQEVTGLTV--NRFVNVDRKY 271

Query: 265 KRYISSLVFKYINKN--LDIDE---------INHMKGMLAFAYNIEPIYIHRLSHKYK 311
            + + ++     NK     ID+         IN + GML+F   ++  Y +RL H  K
Sbjct: 272 AKTVRAMAHSLFNKGEYTLIDKKTRKERAGTINELGGMLSFIDFVDK-YNNRLPHAIK 328