Pairwise Alignments

Query, 323 a.a., RNA-directed DNA polymerase from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., Retron-type reverse transcriptase from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 50.4 bits (119), Expect = 9e-11
 Identities = 64/299 (21%), Positives = 129/299 (43%), Gaps = 41/299 (13%)

Query: 29  EFERLEVRGSH---AYKVYSIPKRKAGRRTIAHPSSKLKICQRHLNAILN----PLLKVH 81
           EF+   + G +   + +   IPK   G R +  P+ K ++ Q+ ++ +L+    P     
Sbjct: 100 EFQSQIITGKYRVESVREVQIPKPNGGVRILGIPTVKDRLVQQAISQVLSLHYDPTFS-- 157

Query: 82  DSSYAYVKGRSIKD-----NALVHSHSAYVLKMDFQNFFNSITPTILRQCL---IQNDIL 133
           D SY +   R   D        V     +++ +D + FF+++    L   L   I +  L
Sbjct: 158 DRSYGFRPDRGAHDALRQAGQEVSEGRDWIVDIDLEKFFDTVNHDRLMWLLGTRIGDKTL 217

Query: 134 LSVNELEKLEQLIFWNPSKKRNGKLILSVGSPISPLISNAIMYPFDKIINDICTKHGINY 193
           L +  + K  +           G   +  GSP+SPL+SN I+   DK +       G  +
Sbjct: 218 LKL--IGKFLRAGMLKDGLVSQGVKGMPQGSPLSPLLSNIILDELDKELE----VRGHRF 271

Query: 194 TRYADD----ITFSTNIKNTLNKLPEIVEQLIIQTYAGRIIINKRKTVFSSKKHNRHVTG 249
            RYADD    +    + K  L+ L   +EQ ++      + +NK K+   S+ +  +  G
Sbjct: 272 VRYADDLIVMVKSEPSAKRVLSSLTAFIEQRML------LKVNKSKSKI-SRPYELNFLG 324

Query: 250 ITLTNDSKISIGRSRKRYISSLVFKYINKNLDID------EINH-MKGMLAFAYNIEPI 301
            ++  + ++ + ++ ++ + + + +   +N  I       E+N  ++G L +  N + I
Sbjct: 325 HSILIEGRLGLSKTSEQRLKAKLKQLTQRNRGISLEQLVKELNPILRGWLNYFKNAQMI 383