Pairwise Alignments

Query, 323 a.a., RNA-directed DNA polymerase from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., Group II intron-encoded protein LtrA from Alteromonas macleodii MIT1002

 Score = 47.0 bits (110), Expect = 9e-10
 Identities = 51/232 (21%), Positives = 103/232 (44%), Gaps = 37/232 (15%)

Query: 42  KVYSIPKRKAGRRTIAHPSSKLKICQRHLNAILNPLLK--VHDSSYAYVKGRSIKD---- 95
           K   I K   G+R +  P+   ++ Q+ +  +L P+      D+S+ +   R+ +     
Sbjct: 89  KRVEIDKPDGGKRQLGIPTIVDRVIQQAIAQVLTPIFDPTFSDNSFGFRPHRNGQQAVKQ 148

Query: 96  -NALVHSHSAYVLKMDFQNFFNSITPTILRQCL---IQNDILLSVNELEKLEQLIFWNP- 150
            N+++ +   + + +D   FF+ +   +L   L   +++  LL + +      ++     
Sbjct: 149 VNSIIKTGRRFAVDVDLSKFFDRVNHDLLMTYLGYKVKDKRLLKLIKRYLRAGILCKTKG 208

Query: 151 -----SKKRNGKLILSVGSPISPLISNAIMYPFDKIINDICTKHGINYTRYADDITFSTN 205
                S+ R G   +  G P+SPL++N ++ P DK +     K G  + RYADD T    
Sbjct: 209 DNQLYSESREG---VPQGGPLSPLLANIMLDPLDKELE----KRGHEFARYADDFTI--- 258

Query: 206 IKNTLNKLPEIVEQLIIQTYAGRIIINKRKTVFSSKKHNRHVTGITLTNDSK 257
               L K P   E+++      R + ++ K V ++ K +     +  T++SK
Sbjct: 259 ----LVKTPRSGERVL--NSISRFLCHRLKLVVNTTKSH-----VVKTSESK 299