Pairwise Alignments

Query, 1530 a.a., glutamate synthase large subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 1782 a.a., glutamate synthase large subunit from Agrobacterium fabrum C58

 Score =  420 bits (1080), Expect = e-121
 Identities = 267/693 (38%), Positives = 375/693 (54%), Gaps = 60/693 (8%)

Query: 875  LDFVKNPAGSIPIEEVEPIESIVKRFATGAMSFGSISYEAHSTLAIAMNRLGAKSNSGEG 934
            +  ++    SIP+E V+    I K  A+GAMS G++   AH  +A   N +G  SNSGEG
Sbjct: 935  MSLIRTAPNSIPLETVQKASEITKTLASGAMSHGALVAAAHEAVAHGTNMVGGMSNSGEG 994

Query: 935  GEDPMRFELNANGDSERSAIKQVASGRFGVTSYYLTNA--DEIQIKMAQGAKPGEGGQLP 992
            GE   R+     G    S IKQ ASGRFGV + YL +   +EI+IK+ QGAKPGEGGQLP
Sbjct: 995  GEHISRY-----GTIRASRIKQFASGRFGVWAGYLADPMLEEIEIKIGQGAKPGEGGQLP 1049

Query: 993  GDKVDEWIGATRHSTPGVGLISPPPHHDIYSIEDLAQLIFDLKNANRKGRVNVKLVSEAG 1052
              KV   I A R  TPGV L+SPPPHHD YSIEDLAQLI D K A  + RV VKLVS  G
Sbjct: 1050 SPKVTVEIAAARGGTPGVELVSPPPHHDTYSIEDLAQLIHDAKAA--RVRVIVKLVSSEG 1107

Query: 1053 VGTIASGVAKAKADVVLIAGHDGGTGASPISSIRHTGLPWELGLAETHQTLLKNGLRNRI 1112
            +GTIA GVAKA ADV+ +AG+ GGTGA+ ++S+++TG   E+G+AE HQ L   GLR ++
Sbjct: 1108 IGTIAVGVAKAGADVINVAGNTGGTGAAAVTSLKYTGRAAEIGIAEVHQALCATGLRAKV 1167

Query: 1113 VVQADGQMKTPRDIAIAVLLGAEEWGVATAALVVEGCIMMRKCHKNTCPVGIATQNKTLR 1172
            +++  G  +T  D+  + LLG + +   T AL++  C+M + C+   CP G+ T     +
Sbjct: 1168 LLRCSGAHQTASDVVKSALLGGDSFEFGTTALMMLKCVMAKNCNIK-CPAGLTTN----Q 1222

Query: 1173 ERFAGRVDDVVTFFQYMAQGLREIMAELGFRTINEMVGQAHKLKVRDDIGHWKYKNLDLS 1232
            E F G    +  +   +A   REI+A LG R++ E  G++  L + D         LDL 
Sbjct: 1223 EAFNGDPRALAQYLMNIAHETREILAGLGLRSLREARGRSDLLHLLDHPA--SVGQLDLR 1280

Query: 1233 PIL-FIEQPRSEDGIYCQTQQNHQLESILDRTLIQLATPALERGEAVKAELP----IINT 1287
             +L  +E+ + ++ +Y +       +  LD   I+L   AL        EL     + N 
Sbjct: 1281 AMLAVVEEVKIDNPVYMEK------DFALDDAFIELVRSALVDSRRENIELGGNRFLNNC 1334

Query: 1288 DRSTGTMLSNEICKVYKDQ-------GLPQ--------------PMQVKFNGSAGQSFGA 1326
            ++S G  L+ +I ++   +        LP                +++  +GSAGQSFGA
Sbjct: 1335 NKSVGGQLAVDIERMLNHELSDEQLDALPAVKRDSRGRRFLEAGSVRIDTSGSAGQSFGA 1394

Query: 1327 FLTKGVYFEVEGDANDYWGKGLSGGTLVLYPNRNATIVPEENIVVGNVCFYGATSGESYI 1386
            F   G+     G  ND  GK   GGT+V+      +     N++VGN   +GAT G +++
Sbjct: 1395 FCNDGMIMVHTGTCNDGVGKSACGGTIVVRSPGGGSKETGGNVLVGNFALFGATGGRTFV 1454

Query: 1387 RGLAGERFCVRNSGAKVVVEGIGDHGCEYMTGGVAVILGSTGRNFAAGMSGGVAYVWDKS 1446
             G AG+RF VRNSGA  VVEG+GD  CEYMT G  + LGS G+ F  GMSGG  Y +D  
Sbjct: 1455 EGQAGDRFAVRNSGATAVVEGVGDFACEYMTNGAVLNLGSFGKGFGNGMSGGFVYQYDPY 1514

Query: 1447 GDFQSKLNAELVDLDPIEAED------RALLKEMLTKHVQFTGSEVAKAFLANFDASLAT 1500
            GD   K++ + + L  I  ED         + ++LT HV  TGS  A   L N+++    
Sbjct: 1515 GDLPKKVSHDSILLGSITGEDEQAAIHNQAVHQLLTLHVAETGSAKAAWLLENWESEQHN 1574

Query: 1501 MVKVMPR------DYKAVLQKRKAQEQQATLAA 1527
                MPR      D   +L+ +  +E    LA+
Sbjct: 1575 FAYGMPRALLLYQDSDEILKAKPRKELLEELAS 1607



 Score =  302 bits (774), Expect = 2e-85
 Identities = 238/794 (29%), Positives = 387/794 (48%), Gaps = 59/794 (7%)

Query: 77  GDGAGILLQKPHEFLLEEAVKLGIKLPSFEKYGVGVVLFPKDEHKRAQCRDILERNAKRL 136
           GDGAG+ L     F  E  +     LP+  ++GVG    P++     +   I+    K  
Sbjct: 7   GDGAGVSLDLSLSFFRE--LTGDAALPA-GRFGVGNFFLPQNPAFHGEAVGIIGNALKEQ 63

Query: 137 DLDVIGYRVLPTNNSMLGADPLSTE-PQFEHVFISGGPGMQPDELERKLYVLRNYTVRVC 195
              V+  R +P N++ +    +  + P  + VF +        E + +++        + 
Sbjct: 64  GFSVLLVRDVPVNDTAIRPAAIPYQLPIRQWVFSAPVECATLAEFDWRIH-----KALLA 118

Query: 196 LESVSNIGDD---FYINSMSYKTLVYKGQLTTEQVPQYFLDLQNPTMVTALALVHSRFST 252
           +E+++    D   FY  S+S +T V KG+L +++V  YF DL +P         H+RFST
Sbjct: 119 IEALAYTVPDLAGFYPLSLSARTQVLKGRLNSQEVMPYFCDLTDPRHKVHTMYFHTRFST 178

Query: 253 NTFPKWRLAQPFRYIAHNGEINTVRGNLNWMKAREAILQSKLFTQAEIDMLLPICQEGAS 312
           NT P   +AQPFR +AHNGE+NT + N    +  EA +   L   A I     +  +G S
Sbjct: 179 NTDPHPSMAQPFRLMAHNGELNTDKKN----RLSEAAV--ALAKNASI-----VRPKGQS 227

Query: 313 DSANFDMVLELLVL-SGRSLPHALMMMIPEAWQENKAMDPKRRAFYQYHANVMEPWDGPA 371
           DS   D  L+  V+  G  L  A++ M+P AW+ +  + P  ++  +Y +   E  DGPA
Sbjct: 228 DSCRLDQTLQARVMEDGLDLVTAVVSMMPPAWENDDTLSPGVKSMLEYFSLYEEKNDGPA 287

Query: 372 SVCFTDGVQVGATLDRNGLRPSRYTVTKDDFLIMASESGVVEIDPANVEYRGRLQPGRIF 431
           ++ F DG  +GA LDR GLRP R TV  DD+L + SE+G +     +V  RGR++ G + 
Sbjct: 288 ALIFGDGTIIGARLDRLGLRPLR-TVETDDYLCVMSEAGQIAFPAESVIRRGRIEAGGML 346

Query: 432 VADLEQGRIISDEEVKDGIASAQPYEKWVEENLLSLKKLPDADNVHSQPSPERL---LHR 488
             D  + R  S  E  + +AS + Y   + +  + L  LP+      Q SP R    L R
Sbjct: 347 YYDHTERRAFSTVEALELLASRRDYSSLLSDARVMLGDLPEVP-ADKQGSPLRYNGDLER 405

Query: 489 QQ---AFGVSSEEVNDIILTLAQTGYEPLGSMGADWPVAVLSHQSQHLSNYFKQLFAQVT 545
            Q   A+  + E    ++  +  +G E + +MG    +  LS Q   ++ YF Q FAQVT
Sbjct: 406 HQRYVAYSHNQESFKFLMDPMLASGAEKISAMGYGNAINALSDQEGGVAKYFSQRFAQVT 465

Query: 546 NPPIDPIRERMVMSLNTYIGRDQNLLAETPAHCRKVELESPVISNAELEKIRAIDNEHLQ 605
           NPP+D IRE   M+L   +G   N  A+     R++ + SP++++ ++ +IR  +     
Sbjct: 466 NPPLDSIREADGMTLRVALGAKPNSGAK---KARQIVVRSPILTHLDMLRIR--EQPETP 520

Query: 606 AKTLDI----VFRASD-EPGKLERALKRICQYAEDAVIDGYSIILLTDRAVNSNHAAIPA 660
            +  ++    VF A D     L +A+  +C        +   I ++TDR V++  AA+P 
Sbjct: 521 VRRFEMLYTPVFDAEDANEAALRQAIDGLCGEVVAFAAEEGGIAVVTDRHVSAGRAALPM 580

Query: 661 MLAVGAVHHHLIRKGLRSKCGIVVETGDARETHHFATLLGYGANAVNPYLVVETIVDLKR 720
           ++ V A++  LI +GLR +  ++VE+G    +HH A  LG+GA+AV P       V  + 
Sbjct: 581 IMVVSAINQRLIEEGLRLRISLIVESGQFSSSHHIAAGLGFGASAVYP-----LGVQFRA 635

Query: 721 QKKLDADVSVEKYFENYRKGVNGGLLKIFSKMGISTLQSYHGAQIFEA--LGISKAVVDK 778
           ++K  AD   +K F+ + K     L+K   K+G+ T +SY G + FE   L  S  V+ +
Sbjct: 636 EEKFGAD--ADKAFKRFAKAAEKSLMKTMGKVGLCTAESYIGGEFFEPNFLDTSDPVLKR 693

Query: 779 YFTGTITRIQGLTLDDIAKEVLVRHRIGYPTR---EIPLQVLDVGGVYQWKQRGEQHLFN 835
           YF    T + G+T   IA+ V   HR     +   +IPL      G+++ +  G  H + 
Sbjct: 694 YFPNVKTPVGGVTFAVIAQAVADWHRKALSVKGENDIPLL-----GLFKERAEGAGHSYG 748

Query: 836 PETIHLLQESTRHK 849
              +    + T  K
Sbjct: 749 TTAVRGFVDMTEEK 762