Pairwise Alignments

Query, 579 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  125 bits (313), Expect = 6e-33
 Identities = 98/343 (28%), Positives = 156/343 (45%), Gaps = 38/343 (11%)

Query: 258 LREEMEKRRDTEVALAQRDTILQNILESSPDSIGIFNENMVYQACNQPFVEALGIAEVSD 317
           L  ++ +RR +E  L  ++ +L+ I ++S  +I   + +    A NQ   E   +  +  
Sbjct: 119 LYTDVTERRKSEETLRDKEGLLRLIFDNSSVAIFTIDSSGRIGAANQRMAEMF-MMPLES 177

Query: 318 LVGKRLQDVI-PEHIYARLSDTDSQVLHQGKSLRYIDRIERSDGEFIWFDVVKSPFRDPA 376
           L+G    D++ P    A   +    ++    ++       RS+G   W  +  S      
Sbjct: 178 LIGMEYVDLVDPGEQEAARKNMADHLIQDRPNVNLERHYWRSNGTAFWGQLTASHMPAYK 237

Query: 377 SGTNGVLIMARDVSERYLAAE----------------------------QLEAANQELER 408
            G  G++ +  D++ER +A +                            +L AA +ELE 
Sbjct: 238 DGHAGLVCVVSDITERKIAEQHLAERSHELEVLNLELTKAVEALAASNAELVAAREELEH 297

Query: 409 LSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYNDAYGHLMGDETL 468
           L+  D+LT   +R R +E +      + R G P+S+I  D+D+FK  ND YGH +GDE L
Sbjct: 298 LARHDTLTGAWSRSRIEESVRQEMLRNSRYGHPVSLIFIDLDHFKRINDGYGHAVGDEVL 357

Query: 469 KQIAIAFTQVANRHSDCVARYGGEEFGILLPNTPQSGAILVAERIHEKVRGLAIPHDHSK 528
           K       Q   R +D + R+GGEEF I+ PN+    AIL+AERI + V     P     
Sbjct: 358 KSFC-DIAQKCMRSTDLLGRWGGEEFVIVTPNSGLMIAILLAERIRKAVMAYDFP----- 411

Query: 529 VADRITVSLGIVTLIPRPEDVPEQMVELADRALYQAKANGRNQ 571
           VA  +T S G+     R  +  E  +  +D ALY AK  GRN+
Sbjct: 412 VAGHVTASFGVAEY--RENETWESWLCRSDAALYAAKEGGRNR 452



 Score = 26.2 bits (56), Expect = 0.004
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 278 ILQNILESSPDSIGIFNENMVYQACNQPF 306
           I+Q+I++  P  + +F++N+   ACN  F
Sbjct: 11  IIQSIIDHLPCGVTLFDQNLEMVACNGLF 39