Pairwise Alignments

Query, 579 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Kangiella aquimarina DSM 16071

 Score =  134 bits (336), Expect = 7e-36
 Identities = 88/281 (31%), Positives = 144/281 (51%), Gaps = 22/281 (7%)

Query: 318 LVGKRLQDVIPEHIYARLSDTDSQ----VLHQG----KSLRYIDRIERSDGEFIWFDVVK 369
           L G    +V+ +  ++ + DT+ Q    VL Q     +S R    I    GE  W ++  
Sbjct: 46  LTGYTADEVLGKDYWSYIQDTEEQSEIEVLRQAVFNQESCRVTIPIRNKKGEPFWSELSI 105

Query: 370 SPFRDPASGTNGVLIMARDVSERYLAAEQLEAANQ-------ELERLSFLDSLTHVANRR 422
           SP           + + +DV+ER    + ++  ++       EL+ L+  DSLT + NRR
Sbjct: 106 SPVFSDGGQLTHYIALQKDVTERVEKEKSIQERHETLLSLKDELQELASRDSLTGLYNRR 165

Query: 423 RFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYNDAYGHLMGDETLKQIAIAFTQVANRH 482
            F ++L  LW +H R    +++   D+D FK YND YGHL GD+ LK +A   ++  +R 
Sbjct: 166 YFGQELKRLWAVHQRLEATMAVAFIDIDSFKLYNDHYGHLEGDKALKAVADKISESFSRK 225

Query: 483 SDCVARYGGEEFGILLPNTPQSGA---ILVAERIHEKVRGLAIPHDHSKVADRITVSLGI 539
           +D VAR+GGEEF ++   T ++G    I   ER+ + +  L I + +S V+  +T+S G+
Sbjct: 226 ADLVARFGGEEFVVVA--TLENGVDSFIKHLERLRQSIIDLKIENQYSAVSSYLTISTGV 283

Query: 540 VTLIPRPEDVPEQMVELADRALYQAKANGRNQTSI--YQPN 578
              +P  +         AD A+YQAK  GRN+  +  Y+P+
Sbjct: 284 CYGVPPKDSSSSLFTRDADIAMYQAKKTGRNRIEVVSYEPD 324