Pairwise Alignments

Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

Subject, 995 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  223 bits (568), Expect = 4e-62
 Identities = 171/618 (27%), Positives = 289/618 (46%), Gaps = 38/618 (6%)

Query: 160 FIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQV 219
           F  +S D  +  +    F+  +     +TG    E++G T   +  +   +S+V+    +
Sbjct: 337 FARSSSDWYWEMDENLIFTWFSERFSYVTGLDPQEVIGKTREYLISEIAPESLVDHQGDL 396

Query: 220 FNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFGRDITERKRHEESL--- 276
                   ++  ++   G+K +  +  VP ++K+   +G  G G D+T  K  E  L   
Sbjct: 397 SARRPFRDFDYAIDTGRGKK-YLRISGVPVFDKECGFIGYRGTGSDVTAIKEIEAQLRES 455

Query: 277 ----EKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTPLSGEQRKHLQTINVSAVTLG 332
               E A++ K+ F++ +SHE+RTP+NGI+G++ + L   L  +QR H+Q+I  SA  L 
Sbjct: 456 KSVAEAANKAKSLFLANMSHEIRTPMNGIIGMAHLALGGELPAKQRHHIQSIKQSAQRLL 515

Query: 333 NIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLV 392
            I NDI+D+ K +  K+ +  A  +    + E   + A  A +K L  ++   +++P  V
Sbjct: 516 GIINDILDLSKAEAGKVVIDAAPFDLANLIDEAISVVAAQASEKRLPINVRIASEVPRGV 575

Query: 393 EVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAE--CDAQHAEITIEVEDTGIGIPEAEQ 450
             D  R+RQ+L N LSNA+KFT  GG+ + V  E    A   ++   V DTG G+   +Q
Sbjct: 576 IGDPLRIRQILLNYLSNAVKFTSSGGIDVDVQIEGGKTAPPTKLRFAVSDTGCGLTPEQQ 635

Query: 451 EKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIR--- 507
             +F  + Q ++        GTG+GLA++RQL +LMGG   V S+ G GSTF  T++   
Sbjct: 636 ATLFQSFQQAEASTSAKFG-GTGLGLAIARQLAELMGGQAGVESQYGSGSTFWFTVQFQG 694

Query: 508 ------VPLLAEAPIEIEPQEPQTE------LNIFMVEDIELNITVARSLLESMGHKVTV 555
                  P    +PI+I       +        + + ED   N  VA  LLE+ G  V V
Sbjct: 695 AVDGVDCPSKFLSPIKIHNNFAHQDHSILQGAQVLLAEDDLTNQMVAVGLLEAAGMLVDV 754

Query: 556 AMTGEEAIQGFNPTEYDLVFLDIQLPDMTGFDIAHYYRTHYSSLP-PLVALTANVLKD-K 613
              G  A++     +Y++V +D+++P M G       R +   L  P+VA+TAN + + K
Sbjct: 755 VGNGAAAVEKAASGKYEIVLMDVRMPGMDGITATRLIRENVELLDLPIVAMTANAMNEHK 814

Query: 614 EEYRQKGMDAAISKPLSVAAVREVIAKMTQHHAGESV-----AKVKSNKEKELPDDLYQQ 668
           +E    GM   +SKP     +  VI       A  S+         S ++  +P     +
Sbjct: 815 DECLAAGMSDFVSKPFQPEQLYGVIQNWVTGLAEASILGTAGMNAMSGRDLHVP----SE 870

Query: 669 LLDLEMLQSYVEIVGSQPV-IDSVHLFEQSMPAYLAVLDSNMVAKDQEGIVSEAHKIKGA 727
           +  L +      + G + + + S+  F Q     +  L   +  +D E    +AH  KG 
Sbjct: 871 IRGLNVRAGLRRVAGMKKLYLSSLQSFVQEQGDIVLRLRRAIANRDFETAGRDAHTFKGL 930

Query: 728 AGSVGLKRIQKIAQKAQS 745
           AG +  K I  I +  ++
Sbjct: 931 AGMIEAKEIVGITEDIEA 948