Pairwise Alignments
Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056
Subject, 1117 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1
Score = 205 bits (522), Expect = 1e-56
Identities = 172/549 (31%), Positives = 272/549 (49%), Gaps = 55/549 (10%)
Query: 118 EIEERIKAEEAREEAMADLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEF 177
+I E I+AEE + + A++E LAER S +++ D I + G
Sbjct: 323 DITEEIEAEERLKASQAEIER-----------LAERN---NSILESVDDGIVGIDLNGRA 368
Query: 178 SGCNRAMEELTGKRESELVG-----LTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWL 232
+ NRA +L +ELVG L D++ E I+ + ++TA +
Sbjct: 369 TFVNRAAAKLLDFEPAELVGSDILPLMALDLHTAEKLYQILLRLTESIRDDTASFKRR-- 426
Query: 233 EYPDGRKSFFELRKVPFYNKDGRHLGLVGFGRDITERKRHEESLEKA-------SRDKTT 285
DG E P ++ G +G+V RDIT+R+ E L +A +R K+
Sbjct: 427 ---DGSPLPVEYIASPVMDR-GNQVGVVLGFRDITQRRLVERQLREAKEAAEAGNRTKSE 482
Query: 286 FISTISHELRTPLNGIVGLSRMLLDTPLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFD 345
F++T+SHE+RTP+NG++G++ +LLDT LS EQR +TI S +L + NDI+D K +
Sbjct: 483 FLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRDSGESLLTVINDILDFSKME 542
Query: 346 RRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTD--LPSLVEVDSTRLRQVL 403
KL+L V + + A A KG+ ++ L D L LV D RLRQVL
Sbjct: 543 AGKLDLDYTEFELVPLVESVVDILAPRAHAKGI--EIASLIDPRLRMLVRSDPGRLRQVL 600
Query: 404 WNLLSNAMKFTKEGGVVMTVS-AECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKS 462
NL NA+KFT++GGV + VS + A +V DTGIGIP Q ++F+M+ QV +
Sbjct: 601 MNLGGNAVKFTEKGGVSIEVSLLDGPDAPAMARFDVRDTGIGIPPEAQGRLFSMFSQVDA 660
Query: 463 GKDNLHAVGTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVPLLAEAPIEIEPQE 522
+ GTG+GLA+SR+L +LMGG++ V S G GS F +T+ + LL AP P +
Sbjct: 661 STARRYG-GTGLGLAISRRLAELMGGEVGVESAVGRGSRFWITLPLELL--APQSAAPPD 717
Query: 523 PQTELNIFMVEDIELNITVARSLLESMGHKVTVAM-----TGEEAIQGFNPTEYDLVFLD 577
+ +V+D +N V L + G +V + GE T +++ +D
Sbjct: 718 LSGH-RVLVVDDNPVNCDVIERQLRAFGVEVHACLDAGSGMGELTRAAAMGTPWEVAVVD 776
Query: 578 IQLPDMTGFDIAHYYRTHYSSLPPL-----VALTANVLKDKEEYRQKGMDAAISKPLSVA 632
Q+P +TG ++ ++P L V ++ + + Q +DA + KPL +
Sbjct: 777 SQMPVVTGSEMVRMIH----AIPMLAGTRIVVTSSQGMPADQNDGQPAIDAFLHKPLRQS 832
Query: 633 AVREVIAKM 641
+ + I ++
Sbjct: 833 TLLDTIGRV 841
Score = 85.9 bits (211), Expect = 1e-20
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 12/225 (5%)
Query: 517 EIEPQEPQTE-LNIFMVEDIELNITVARSLLESMGHKVTVAMTGEEAIQGFNPTEYDLVF 575
E + EP + L I + ED +N VA LL +GH V V G EA++ YD+V
Sbjct: 857 EYKASEPAAKRLRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLPYDVVL 916
Query: 576 LDIQLPDMTGFDIAHYYRT--HYSSLPPLVALTANVLK-DKEEYRQKGMDAAISKPLSVA 632
+D+Q+P+M G + R ++ P+VA+TAN ++ D + GMD ISKP+
Sbjct: 917 MDVQMPEMDGLEATRAIRALPLAAAQVPIVAMTANAMRGDDQMCFDAGMDGYISKPIDRH 976
Query: 633 AVREVIAKMTQHHAGESVAKVKSNKEKELPDDLYQQLLDLEMLQSYVEIVGSQPVIDSVH 692
+ E +AK + + K + P + + +D ++L + + + V++ +
Sbjct: 977 KLAEALAKYS------GAPETKPAEPPAAPQN--SKAVDRDVLDALAADIEADTVVEILV 1028
Query: 693 LFEQSMPAYLAVLDSNMVAKDQEGIVSEAHKIKGAAGSVGLKRIQ 737
F + + D E + EAH IKGAA S+GL ++
Sbjct: 1029 KFMEDARTRQNNAAALAPTGDLEKVRREAHTIKGAAASLGLLAVR 1073
Score = 41.2 bits (95), Expect = 3e-07
Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 17/175 (9%)
Query: 139 EVYQREKTQVELAERTALLRSFIDASPDLIY-------YRNAKGEFSGCNRAM-EELTGK 190
++ +R++ + E+AE R F ++ D + + G+F+ R + + G+
Sbjct: 196 DISERKRIEREMAESEERFRDFAQSTSDWFWEMGPDLRFTGFSGQFTEHTRTLPDHYVGR 255
Query: 191 RESELVGL-TPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPF 249
E++ TP +V R+ +A + F +T DG F + P
Sbjct: 256 TRDEMISDDTPAEVRRQNLADMAARRPFRDFVYHT--------REMDGPGRFLRVNGKPV 307
Query: 250 YNKDGRHLGLVGFGRDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGL 304
++ G G G DITE EE L+ + + + L + +GIVG+
Sbjct: 308 FDASGEFTGYRGTASDITEEIEAEERLKASQAEIERLAERNNSILESVDDGIVGI 362