Pairwise Alignments

Query, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

Subject, 777 a.a., PAS domain S-box from Enterobacter asburiae PDN3

 Score =  894 bits (2310), Expect = 0.0
 Identities = 457/787 (58%), Positives = 604/787 (76%), Gaps = 25/787 (3%)

Query: 1   MKPMKNLAQYYVDLLVKLGILRFSILLALALVALAVVVQVGITLILNGFVDDIDIIRSVF 60
           MK ++ LAQYYVDL++KLG++RFS+LLALALV LA+VVQ+ +T++L+G V+ ID+IRS+F
Sbjct: 1   MKQIRMLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTMVLHGQVESIDVIRSIF 60

Query: 61  FGLLITPWAVYFLSVVVDQLEESRQRLSKLVSKLKDMRSRDQELNQKLQQNIVKLNQEIE 120
           FGLLITPWAVYFLSVVV+QLEESRQRLSKLV KL++MR RD +LN +L+ NI +LNQEI 
Sbjct: 61  FGLLITPWAVYFLSVVVEQLEESRQRLSKLVDKLEEMRERDLKLNVQLKDNIAQLNQEIS 120

Query: 121 ERIKAEEAREEAMADLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGC 180
           +R KAE  R+  +  L+ E+ +RE TQ++L ++++ LRSF+DASPDL++YRN   EFSGC
Sbjct: 121 DREKAEAERQATLEQLKIEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGC 180

Query: 181 NRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKS 240
           NRAME LTGK E +L+ L P DVY +E A  ++ETD++VF +N ++TYEQWL+YPDGRK+
Sbjct: 181 NRAMELLTGKSEKQLINLKPQDVYSEEAAAKVMETDEKVFRHNVSLTYEQWLDYPDGRKA 240

Query: 241 FFELRKVPFYNKDGRHLGLVGFGRDITERKRHEESLEKASRDKTTFISTISHELRTPLNG 300
            FE+RKVP+Y++ G+  GL+GFGRDITERKR++++LE+ASRDKTTFISTISHELRTPLNG
Sbjct: 241 CFEIRKVPYYDRVGKRHGLMGFGRDITERKRYQDALERASRDKTTFISTISHELRTPLNG 300

Query: 301 IVGLSRMLLDTPLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEE 360
           IVGLSR+LLDT L+ EQ K+L+TI+VSAVTLGNIFNDIIDMDK +RRK++L    ++F  
Sbjct: 301 IVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTS 360

Query: 361 FVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVV 420
           F+A++E L+ L A+QKGLRF +E    LP  V  D TRLRQ+LWNL+SNA+KFT++G V 
Sbjct: 361 FLADLENLSGLQAQQKGLRFIMEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQKGQVA 420

Query: 421 MTVS-AECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVS 479
           + +   E D  H     EVED+G+GIP+ EQ+KIFAMYYQVK       A GTGIGLAVS
Sbjct: 421 VRIRFDEGDMLH----FEVEDSGMGIPQEEQDKIFAMYYQVKDSNGGKPATGTGIGLAVS 476

Query: 480 RQLIKLMGGDISVNSEEGFGSTFTVTIRVPLLAEAPIEIE-----PQEPQTELNIFMVED 534
           ++L K MGGDI+V S+ G GSTFT+T+  P +AE   E+E        P   L++ +VED
Sbjct: 477 KRLAKSMGGDITVASQPGKGSTFTLTVHAPAVAE---EVEDTFENDDMPLPALHVLLVED 533

Query: 535 IELNITVARSLLESMGHKVTVAMTGEEAIQGFNPTEYDLVFLDIQLPDMTGFDIAHYYRT 594
           IELN+ VARS+LE +G+ V VAMTG+ A++ F P EYDLV LDIQLPDMTG DI+     
Sbjct: 534 IELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDISRELTR 593

Query: 595 HYSS--LPPLVALTANVLKDKEEYRQKGMDAAISKPLSVAAVREVIAKM--TQHHAGESV 650
            Y++  LPPLVALTANVLKDK+EY   GMD  +SKPL+V A+  +I K   T+     ++
Sbjct: 594 QYAADELPPLVALTANVLKDKKEYLDAGMDDVLSKPLAVPALTAMIKKFWDTRDEEESTM 653

Query: 651 AKVKSNKEKELPDDLYQQLLDLEMLQSYVEIVGSQPVIDSVHLFEQSMPAYLAVLDSNMV 710
             V S K         Q +LD  ML+ Y+++VG + + D + +FE+ MP YL+VL+SN+ 
Sbjct: 654 TSVDSAKA--------QTILDTAMLEQYIDLVGPKLITDGLAVFEKMMPGYLSVLESNLT 705

Query: 711 AKDQEGIVSEAHKIKGAAGSVGLKRIQKIAQKAQSPEAPAWWENISDWVEEIKNEYQSDI 770
           A+D++GIV E HKIKGAAGSVGL+ +Q++ Q+ QSP+ PAW +N+ DWVEE+K E+Q+D+
Sbjct: 706 ARDRKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDNVGDWVEEMKQEWQNDV 765

Query: 771 ALLKRWL 777
           A+LK W+
Sbjct: 766 AVLKAWV 772