Pairwise Alignments

Query, 458 a.a., DNA repair protein RadA from Vibrio cholerae E7946 ATCC 55056

Subject, 507 a.a., Circadian clock protein kinase KaiC from Xanthobacter sp. DMC5

 Score = 44.7 bits (104), Expect = 7e-09
 Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 38/194 (19%)

Query: 77  SGFKELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQTMCLLSGQMP---TLYVTGEESLQ 133
           +G + LD VL GG   G   L+ GNPG GK+T+ L+   LL G       LY+T  E+ Q
Sbjct: 17  TGIEGLDEVLSGGFTSGHVFLLEGNPGTGKTTIALR--FLLEGAAAGERCLYITLSETEQ 74

Query: 134 QVAMRASRLG------------LPKQHL-------KMLSETNVD------RICQIAEQEK 168
           ++   A+  G            +P + L        +L  ++++       I Q  E+ +
Sbjct: 75  ELRNGAAAHGWTIDGNIEVFVLVPAESLLDGDQQQSLLYASDLELGEATAAIFQAFERLR 134

Query: 169 PRIMVIDSIQVMHVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGP 228
           P  +V+DS+     ++++    S  + R    AL  Y  ++   V ++   T   T    
Sbjct: 135 PSRVVLDSL-----SEIRLLAQSSLRYRRQILALKHYFARHGATVLLLDDRT---TETSD 186

Query: 229 KVLEHIIDCSILLD 242
           K    ++   ILL+
Sbjct: 187 KTAHSVVHGVILLE 200



 Score = 38.5 bits (88), Expect = 5e-07
 Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 21/181 (11%)

Query: 77  SGFKELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQ--TMCLLSGQMPTLYVTGEESLQQ 134
           S   ELD +LG GI  G++ LI G  G GKS   LQ        G+  + +V  EE L  
Sbjct: 259 SDVPELDALLGDGIEQGSSTLILGPAGTGKSIFALQFAVAACRRGEAASFFVFDEE-LDL 317

Query: 135 VAMRASRLGLPKQ--------HLKMLSETNV------DRICQIAEQEKPRIMVIDSIQVM 180
           +  RA  +G   +        H++ L    +       R     ++ + +++VIDS+   
Sbjct: 318 LFDRARAMGFDLRALRDAGLLHIEQLDAAEMSPGEFAQRTRNQVDKAQAKVVVIDSLNGY 377

Query: 181 HVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSIL 240
             A +      +  + E    L R      + V   G V   G +  P  + ++ D  IL
Sbjct: 378 QAA-MPEEHSLILHIHELIQYLNRRGANTFLTVAQHGLV---GEMRAPVDVTYLADTVIL 433

Query: 241 L 241
           L
Sbjct: 434 L 434