Pairwise Alignments

Query, 458 a.a., DNA repair protein RadA from Vibrio cholerae E7946 ATCC 55056

Subject, 500 a.a., Circadian clock protein KaiC from Variovorax sp. SCN45

 Score = 45.4 bits (106), Expect = 4e-09
 Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 33/166 (19%)

Query: 77  SGFKELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQTMCLLSGQ---MPTLYVTGEESLQ 133
           +G   LD V  GG+  G   L+ G PGAGK+TL LQ   LL G+      LYVT  E+ +
Sbjct: 16  TGVPGLDDVTAGGLPGGHVYLVEGTPGAGKTTLGLQ--FLLQGRSLGQKGLYVTLSETSE 73

Query: 134 QVAMRASRLGLPKQHLKMLSETNVDRICQIAEQ-----------------------EKPR 170
           ++A  A+  G     +++    + D +   AEQ                       EKP 
Sbjct: 74  ELAQGAASHGWDLAGVEIFDLVSDDDLSAEAEQSILQPSDFELGETIRGVMALVEREKPS 133

Query: 171 IMVIDSIQVMHVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIV 216
            +V DS+  + +    S      + R    AL R+  ++   V ++
Sbjct: 134 RVVFDSLSELRLLSQSS-----LRYRRQILALKRFFLKHGCTVLLL 174



 Score = 40.0 bits (92), Expect = 2e-07
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 76  TSGFKELDRVLGGGIVPGAAILIGGNPGAGKST 108
           +SG  +LDR+LGGG+ PG  +L  G  G GK+T
Sbjct: 255 SSGNPDLDRLLGGGLTPGTNLLFAGPAGVGKTT 287