Pairwise Alignments

Query, 458 a.a., DNA repair protein RadA from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., predicted repair protein (NCBI) from Escherichia coli BW25113

 Score =  739 bits (1909), Expect = 0.0
 Identities = 370/460 (80%), Positives = 422/460 (91%), Gaps = 2/460 (0%)

Query: 1   MVKA-KRAYVCNECGADFPRWQGQCNACGSWNSISEVRLAASPQVARNERLVGYAGALE- 58
           M KA KRA+VCNECGAD+PRWQGQC+AC +WN+I+EVRLAASP VARNERL GYAG+   
Sbjct: 1   MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60

Query: 59  AKVQTLADIDLQEVPRFTSGFKELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQTMCLLS 118
           AKVQ L+DI L+E+PRF++GFKE DRVLGGG+VPG+AILIGGNPGAGKSTLLLQT+C L+
Sbjct: 61  AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120

Query: 119 GQMPTLYVTGEESLQQVAMRASRLGLPKQHLKMLSETNVDRICQIAEQEKPRIMVIDSIQ 178
            QM TLYVTGEESLQQVAMRA RLGLP  +L MLSET++++IC IAE+E+P++MVIDSIQ
Sbjct: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180

Query: 179 VMHVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCS 238
           VMH+ADVQSSPGSVAQVRE+A  LTR+AK   VA+ +VGHVTKDG+LAGPKVLEH IDCS
Sbjct: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240

Query: 239 ILLDGDTDSRFRTLRSHKNRFGAVNELGVFAMTGQGMREVSNPSAIFLSRGEEATSGSSV 298
           +LLDGD DSRFRTLRSHKNRFGAVNELGVFAMT QG+REVSNPSAIFLSRG+E TSGSSV
Sbjct: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300

Query: 299 MVVWEGTRPLLVEIQALVDYSQLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFV 358
           MVVWEGTRPLLVEIQALVD+S +ANPRRVAVGLEQNRL++LLAVLH+HGGLQMADQDVFV
Sbjct: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360

Query: 359 NVVGGVKVTETSADLALLMALLSSFRDRPLPKDVVVFGEVGLAGEIRPVPSGQERLNEAF 418
           NVVGGVKVTETSADLALL+A++SS RDRPLP+D+VVFGEVGLAGEIRPVPSGQER++EA 
Sbjct: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420

Query: 419 KHGFKKAIVPIANMPKGGIEGMQIHGVKKLSDAIAAFDEL 458
           KHGF++AIVP AN+PK   EGMQI GVKKLSDA++ FD+L
Sbjct: 421 KHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL 460