Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator GalS from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., DNA-binding transcriptional repressor of ribose metabolism (NCBI) from Escherichia coli BW25113

 Score =  164 bits (414), Expect = 4e-45
 Identities = 110/331 (33%), Positives = 168/331 (50%), Gaps = 5/331 (1%)

Query: 1   MATIKDVAREAGVSVATVSRVINKSPKASQASIDTVTSAMHKLGYRPNAAARALVNQSTN 60
           MAT+KDVAR AGVS +TVS VINK    S+A    V +A+ +L Y P+A AR+L    T+
Sbjct: 1   MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTH 60

Query: 61  TIGVLVSDVSDPFFGTLVKAVDTVAHREGKHLLIGNGYHRAEEERRALELLINSRCDALV 120
           TIG+L++  ++PF+  LV+ V+      G  L++ N     +   R LE L+  R D L+
Sbjct: 61  TIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLL 120

Query: 121 I--HSKALPNEELIEYANEVKTLVLINRHIPQLADRCISLDNQ-KGAYLATDFLIRQGHR 177
           +       P+ E+++    V T+++     P   D  +  DN   G  LAT +LI +GH 
Sbjct: 121 LLCTETHQPSREIMQRYPTVPTVMM--DWAPFDGDSDLIQDNSLLGGDLATQYLIDKGHT 178

Query: 178 NIACISSSHQIEDADQRIAGYQQALNEHGITLSSSYIEKASPDSEGGEQAMTNLLVKSLP 237
            IACI+       A  R+ GY+ A+   G+ +   Y      +  GG  AM  LL   L 
Sbjct: 179 RIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLR 238

Query: 238 FTAVVAYNDNMAAGALLVLEENGHSVPEHVSVIGFDDALISRYLRPRLTTVRYPIQLMAE 297
             AV   ND MA G    L +    VP+ ++VIG+DD  ++ ++ P LTT+  P   + E
Sbjct: 239 PQAVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGE 298

Query: 298 KATQLALALATDAPRENDPMIFSPTIVRRDS 328
            A  + +   T    +   +  +P ++ R S
Sbjct: 299 LAIDVLIHRITQPTLQQQRLQLTPILMERGS 329