Pairwise Alignments

Query, 304 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., HTH-type transcriptional activator CmpR from Xanthobacter sp. DMC5

 Score = 98.6 bits (244), Expect = 2e-25
 Identities = 84/298 (28%), Positives = 140/298 (46%), Gaps = 13/298 (4%)

Query: 1   MASHISLKQLRVFTTITQHKSLTVAAEVLCLSKAAVSVALSELEKQLGHALFDRVNNRLV 60
           +A H +L+QLR+        S   AA+ + LS  AV+  +  LE+ +G  +F+RV+ RL 
Sbjct: 1   VAPHWTLRQLRLVALAAASGSYAKAAQDMGLSPPAVTAQMKALEEDIGVPVFERVDGRLR 60

Query: 61  LNQEGQKLLPMADELLQRAKDIDRLFAE-QQVLTGKLRIGSSDTIGNQVAPYLISAFRQL 119
               GQ+LL   + + +   + +R  A  +    G + +G   T     AP  ++AFR+ 
Sbjct: 61  PTAAGQELLSAQERIARALSEAERAIAALKSPERGSVVVGVVST-AKYFAPMALAAFRRR 119

Query: 120 HPHPSQSLFISNSAQVCQKLVDYELDIGLIEGKTLHPELISTQFSQDEMCIICAP-DHPL 178
            P     L I N   + + +V  + D+ ++ G+        T+   D   II AP DHPL
Sbjct: 120 RPEIELRLIIGNREDIIRGIVSLDFDVAIM-GRPPPALEAETRLIGDHPHIIVAPVDHPL 178

Query: 179 -AQQERLVMSDFEHSDWVLREAGSGSREFFLRVI----APRIEHWIEAFELNTTEALINS 233
             +++R+  +D      ++RE GSG+R    RV     AP       A E+ + E +  S
Sbjct: 179 FKRRKRITPADLTRESLLVREPGSGTRILMERVFEEAGAPNPP---IAMEIGSNETIKQS 235

Query: 234 VSSGLGLGCLSRLAAKTPQQDGRVVILNIPLDMKRRFWMLVH-KEKYQNPLLRQFIEF 290
           V +GLGL  +S         DGR+ +L +      R W+ V  ++K   P  +  ++F
Sbjct: 236 VMAGLGLAFISAHTVAAEVADGRLRVLEVEGLPVVRQWLAVRARDKRLLPAGQALMDF 293