Pairwise Alignments

Query, 1148 a.a., exonuclease V subunit gamma from Vibrio cholerae E7946 ATCC 55056

Subject, 1150 a.a., exodeoxyribonuclease V subunit gamma from Rhodanobacter sp000427505 FW510-R12

 Score =  392 bits (1006), Expect = e-112
 Identities = 345/1139 (30%), Positives = 511/1139 (44%), Gaps = 149/1139 (13%)

Query: 4    VYHSNQVETLKILLVHLIKNEPLDDPFIPESILVQSPGMSQWLKMALASELG------VA 57
            V+  ++ E L   L   ++ +   +P   ++++V  PG+ +WL   LA   G      +A
Sbjct: 10   VHRGSRTERLADALALQLEAQRPANPLAAQTVVVAHPGLQRWLLGHLAQRNGPHGGHGIA 69

Query: 58   ANLEFPLPATFIWQMFTQVLPDVPQ-RSAFNKEAMSWRLMELLPKLLDRTEFQPLQRYLQ 116
            AN+E  LP  +  +   +VL D      A+  E + WRL+  LP L    +   +  YL 
Sbjct: 70   ANIEMILPWQWFERAARRVLGDEALIGGAYRHELLRWRLLAALPAL----QAPEVASYLA 125

Query: 117  DDEDDSKRFQLAEKIADIFDGYLVYRPDWILSWEAGEDVVEIADQHP------WQPILWR 170
             D    + FQLAE +A ++  YL+YRPDWIL WE          +HP      WQ  LW+
Sbjct: 126  GDGAARRSFQLAEHLAGLYTQYLIYRPDWILDWE----------RHPARYAGDWQAALWQ 175

Query: 171  ELYAYTHKQGHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAM 230
             L A T +      HRA      +E L +G+      P  L +FG+S LPP  + AL+A 
Sbjct: 176  RLRAATPRP-----HRAQRSAALLEALRTGNALAGDPP--LHVFGVSHLPPDVLAALQAT 228

Query: 231  GEHIDVHLMLTNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQVTIGSEVSPLKGDVEN 290
              H  VHL   +PC+ +W  +R +++L   A                             
Sbjct: 229  ALHTPVHLYFPDPCREHWVYLRRQRFLLAHA----------------------------- 259

Query: 291  YLQESMHLSHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRD-----SLLHHIQ 345
               +   L + VG+ LL ++G++ +D    L + D +E    ++         SLL  +Q
Sbjct: 260  --DDPQALYYEVGHPLLVALGRIAQDFCLTLDKCDATEERDPLDEAEPLDDATSLLARLQ 317

Query: 346  ADILHLQEHQDDAKFASSGHKPSIAAQDD---------SLQIALCHSPIREVEVLHDRLL 396
            + I  LQ     A   +   +   AA DD         SL++  CH+ +RE+EVL + LL
Sbjct: 318  SSIRCLQPELVGAPIRAQ--QADGAALDDILPALRHDASLRVHACHTRLRELEVLKNALL 375

Query: 397  AEFERDPSLKPRDVIVMVPDINAYAPYIQAVFGNAPGER----FIPFSISDRSADQESPI 452
                 D +L+ RD++VM PDI AYAPY+ AVFG     R     IP+ ++D       P+
Sbjct: 376  RCLADDSTLQHRDIVVMAPDIGAYAPYLAAVFGEPAQYRRDPLHIPWHLADVGLAHAHPL 435

Query: 453  LTAFLQLLALPQSRCLASELLELLETPAIMARFAIDEEEFATAKRWVEEAGIRWGLNSDT 512
            + AF Q L L +SR   SE+L+ L+ PA+  RFAID       +RW+  A + WGL++  
Sbjct: 436  MHAFSQWLDLAESRFTVSEVLDFLDVPAVARRFAIDAGSRDALERWLRRARVAWGLDAAM 495

Query: 513  GAEFELPASEQNTWQFGIERMLLGYAMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAH 572
             AE    A + N+WQFG++RM  G     +AG   L G  + P   V G + E  G+L  
Sbjct: 496  KAEAGAAAVDANSWQFGLDRMYAGLIAGQDAGGGLLDG--ILPLRGVAGGAVEALGQLDR 553

Query: 573  FVQTLSELRSQLAQTQSMEQWRYWLNELLERCFSVDLQG---ELALKTIRDSLVNLKQQL 629
             +  L + R   A  + +  W  WL E L+  F  D +    + AL  +R     L  Q 
Sbjct: 554  LLGELRQARHAFAGARPLAAWSTWLLERLDALFLADPRDAAEQHALDALRRLAAGLASQA 613

Query: 630  ADAGYQQAVSPAIIRQVLTNKLSGTRISQRFLAGQVNFCTLMPMRSIPFRRVCLLGMNDG 689
            ++AG    +  +++R+ L   L      Q FL G V FC L+P RSIPFR VCLLGMN+G
Sbjct: 614  SEAGLDAPLPWSVVREALRGALDAVPERQGFLLGGVTFCGLVPQRSIPFRVVCLLGMNEG 673

Query: 690  VYPPNEMVEGFDLRNVQRRVGDRSRREESRYLFLEALLSAKEQLYISYVGRSIQDNSERV 749
             +P      G +    Q R GDR  R E RYLFLEAL+SA++ L++SYVG  ++D   R 
Sbjct: 674  EFPRPGHDAGLNRILAQPRRGDRDTRNEDRYLFLEALMSARDALHVSYVGEGVRDGKPRN 733

Query: 750  PSVLVSELLEYCEQNYCLAGDENLESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAR-- 807
            P+  ++ELL++ ++ + LA D   E              ++P+ PF  + +   +  R  
Sbjct: 734  PAAPLAELLQFLDEQHGLAADAQAE---------RPWRVRHPLQPFDARYYERDAQGRPR 784

Query: 808  ------EWLPAARRQGQSSADFLTPLSDYLLEVSWPM--ELDLVELQRFWRLPVEYFFKR 859
                   + PA      S AD   P  D        +  EL L  LQRFWR P      R
Sbjct: 785  HDPRLFSYEPAFLAAASSGAD-ARPFLDSPTATPQTVTGELALGALQRFWRDPARDALLR 843

Query: 860  RLKVSFEPPLAVLE----DDEPFALDGLSAYQLRDELVENLLACRDGAERDQVVAQFAKQ 915
               +S +   A+ +    D EP         ++   L+   LA        +  A  A+ 
Sbjct: 844  SQGISLQ---ALADNGWPDREPLETPLEKIERVDHRLLFESLAAGHAELPSEPPAWLAR- 899

Query: 916  QRAQGKLPVAAFGD---LELAQSAQQALALAEKIGFLCHQPLEDEEIDLRLQPFDDGREV 972
                G L   A G+     L  S +  LA A  +          + IDL     D G  +
Sbjct: 900  ---SGMLAGGAIGERSWTRLRDSLRPLLAQARPLFAGGGVQTLAQAIDL-----DLGDGL 951

Query: 973  LLRGWLVKRYQ---SGLV--RARSG-AIRSEDLLAAWIDHLC--LAASGKAV---TTHLI 1021
             L G + + ++    GL+   AR G A    DLL  ++D  C  LA +G       T L 
Sbjct: 952  RLTGTVDRVFRGADGGLLWFDARPGRAANLRDLLGFYLDWACLQLARAGDDTPLQATLLE 1011

Query: 1022 GYERKEG------VQHQMLPPLNDAQQAKTL---LSELVALFCQGMNQPLAYFPKTALA 1071
               R +G       Q   +     AQ+ K L   L  L+  +     QPL +FP+TA A
Sbjct: 1012 QVRRTQGGASVLVAQAAGMLDTIRAQEGKQLRHGLRRLIEAYQAAGRQPLLFFPRTAQA 1070