Pairwise Alignments

Query, 1148 a.a., exonuclease V subunit gamma from Vibrio cholerae E7946 ATCC 55056

Subject, 1160 a.a., ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease, recombinase subunit from Pseudomonas putida KT2440

 Score =  647 bits (1669), Expect = 0.0
 Identities = 428/1124 (38%), Positives = 623/1124 (55%), Gaps = 105/1124 (9%)

Query: 2    FTVYHSNQVETLKILLVHLIKNEPLDDPFIPESILVQSPGMSQWLKMALASE-------- 53
            F + H N+++ L+ L+V  ++  PL  P   E  LVQS G++QWLK+ALA +        
Sbjct: 11   FMIVHGNRLDDLRSLVVSWMRRYPLA-PLENEIALVQSNGIAQWLKLALAEDPLEDDQGG 69

Query: 54   LGVAANLEFPLPATFIWQMFTQVL--PDVPQRSAFNKEAMSWRLMELLPKLLDRTEFQPL 111
             G+AA ++  LP +F+WQ++  VL   ++P+ S  +K  ++WRLM LLP L++R  F+PL
Sbjct: 70   CGIAAAIDVQLPGSFMWQLYRSVLGRSEIPEVSLLDKAPLTWRLMRLLPALIERPHFEPL 129

Query: 112  QRYLQDDEDDSKRFQLAEKIADIFDGYLVYRPDWILSWEAGEDVVEIA--------DQHP 163
            +R+L DD D  KR+QLAE++AD+FD Y VYR DW+  W  GE V+  A          + 
Sbjct: 130  RRFLTDDSDLRKRYQLAERLADLFDQYQVYRADWLKDWATGEHVINTARGERKVLPPGNR 189

Query: 164  WQPILWRELYAYTHKQGHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRY 223
            WQ  LWR L     +QG +   RA ++QRFIE++ S +   +  P R+ +FGIS+LP + 
Sbjct: 190  WQAELWRALLEDVGEQGMA-QSRAGVHQRFIERINSLEQAPAGLPPRVIVFGISSLPAQA 248

Query: 224  IDALRAMGEHIDVHLMLTNPCQHYWGDIRDRKYLAR--VAAQKRKILQINGEQVTIGSEV 281
            ++AL  +     V L + NPC+H+W DI   K L R     Q+RK             + 
Sbjct: 249  LEALAGLSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRK-------------QG 295

Query: 282  SPLKGDVENYLQESMHLSHAVGNSLLASMGKMGRDNLYLLAQNDQ----------SELEL 331
             PL+ D      +++H  HA  + LLA+ GK GRD + LL   D             ++L
Sbjct: 296  MPLQLD-----DQTLH-QHA--HPLLAAWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDL 347

Query: 332  FIEIQRDSLLHHIQADILHLQEHQDDAKFASSGHKPSI-AAQDDSLQIALCHSPIREVEV 390
            F +    +LL+ +Q DIL L+   +     S    P++   +D S++  + HSP REVE+
Sbjct: 348  FSDGSPTTLLNELQDDILELRPLAE-----SRERWPAVDTTKDRSIRFHIAHSPQREVEI 402

Query: 391  LHDRLLAEFERDPSLKPRDVIVMVPDINAYAPYIQAVFGNAPGE--RFIPFSISDRSADQ 448
            LHD+LLA F  DP+L+PRDVIVM+PDI+ YAP+I+AVFG       R+IPF+++D+    
Sbjct: 403  LHDQLLARFSADPTLRPRDVIVMLPDIDTYAPHIRAVFGQLQRNDPRYIPFTLTDQGQRG 462

Query: 449  ESPILTAFLQLLALPQSRCLASELLELLETPAIMARFAIDEEEFATAKRWVEEAGIRWGL 508
              P+L A   LL LP SR   SE+L+LL+ PA+ ARF I E +  T  RW+E AGIRWGL
Sbjct: 463  REPLLIALEHLLKLPDSRFAVSEVLDLLDVPAVRARFGIRENDLPTLHRWIEGAGIRWGL 522

Query: 509  NSDTGAEFELPAS-EQNTWQFGIERMLLGYAMPAEAGLYELGGQWLAPYNQVQGMSAELA 567
            ++   A   LPA  EQN+W+FG+ RMLLGYA+    G+ E     + PY+++ G+ A L 
Sbjct: 523  DAAQRASLGLPAGLEQNSWRFGLRRMLLGYAV----GVGE-ACDGIEPYDEIGGLDAALI 577

Query: 568  GKLAHFVQTLSELRSQLAQTQSMEQWRYWLNELLERCFSVDLQGE----LALKTIRDSLV 623
            G L   +  L      L++  ++ QW   L+ LL   F  + +G+    + L+ +RDS +
Sbjct: 578  GPLVALLDALEVACQALSEPATVSQWGERLHALLHVFFLAEDEGDEFLLMQLQDLRDSWL 637

Query: 624  NLKQQLADAGYQQAVSPAIIRQVLTNKLSGTRISQRFLAGQVNFCTLMPMRSIPFRRVCL 683
             + + +   G    +   ++R+   + L   ++SQRFLAG VNFCTLMPMR+IPFR VCL
Sbjct: 638  EVCETV---GLHDPLPLTVVREAWLSGLDQGKLSQRFLAGSVNFCTLMPMRAIPFRVVCL 694

Query: 684  LGMNDGVYPPNEMVEGFDLRNVQRRVGDRSRREESRYLFLEALLSAKEQLYISYVGRSIQ 743
            LGMNDG YP  +    FDL     R GDRSRRE+ RYL LEALLSA++QLY+S+VGRSI+
Sbjct: 695  LGMNDGDYPRAQPPLDFDLMASDYRPGDRSRREDDRYLLLEALLSARDQLYVSWVGRSIR 754

Query: 744  DNSERVPSVLVSELLEYCEQNYCLAGDENLESDDSGRRLVEHLTTQYPMVPFSPQAFIAG 803
            DNSER  SVL+ +L ++    + LA  +  +    G +L+  LT ++P+ PFSP+ F  G
Sbjct: 755  DNSERPASVLIGQLRDHIAAGWHLADAQQGQPARPGEQLLHALTQEHPLQPFSPRYFQKG 814

Query: 804  ----SFAREWLPAARRQGQSSADFLTPLSDYLLEVSWPMELDLVELQRFWRLPVEYFFKR 859
                S+A EW     +QG++ A     L  Y         L L +L  F R PV +FF +
Sbjct: 815  SPLFSYAHEW-QVLHQQGETDAQSEPGLPPY----QDAEALSLHQLNDFLRHPVRHFFSQ 869

Query: 860  RLKVSFEPPLAVLEDDEPFALDGLSAYQLRDELVENLLACRDGAERDQVVAQFAKQQRAQ 919
            RLKV FE   A   D+EPF LD L  Y   + L+   LA  D AE  Q +   A++ +A 
Sbjct: 870  RLKVYFEALEAPTPDEEPFVLDTLQRYGASESLLGAALAEPDNAE--QALRAQARRLQAC 927

Query: 920  GKLPVAAFGDLELAQSAQQALALAEKIGFLCHQPLEDEEIDLRLQPFDDGREVLLRGWLV 979
            G LP+A FG+L   +  +    L ++   L  +  +  E  L +  F+ G+   L GWL 
Sbjct: 928  GLLPLAGFGELLQNELIEPLPDLLQRHQQLLQRWPQLVEGALPVH-FEHGQH-RLEGWLG 985

Query: 980  KRYQS------------GLVRARSGAIRSEDLLAAWIDHLCLAASGKAVTTHLIGYERKE 1027
            + +Q+              + A    ++   L+A W+ HL   A+G    + L+  +   
Sbjct: 986  RVFQAEDQSLLSITTVPNTISAGRNNLKWHRLIAPWVTHLAACAAGYPYNSALVASDLT- 1044

Query: 1028 GVQHQMLPPLNDAQQAKTLLSELVALFCQGMNQPLAYFPKTALA 1071
                 +L PL  AQ A+ LL +L+      MN PL    KTA A
Sbjct: 1045 ----LLLAPLPQAQAAQ-LLGDLLVARQAAMNAPLPVAAKTAFA 1083