Pairwise Alignments

Query, 1148 a.a., exonuclease V subunit gamma from Vibrio cholerae E7946 ATCC 55056

Subject, 1122 a.a., exodeoxyribonuclease V subunit gamma from Escherichia coli ECRC62

 Score =  929 bits (2400), Expect = 0.0
 Identities = 512/1141 (44%), Positives = 717/1141 (62%), Gaps = 50/1141 (4%)

Query: 1    MFTVYHSNQVETLKILLVHLIKNEPLDDPFIPESILVQSPGMSQWLKMALASELGVAANL 60
            M  VYHSN+++ L+ L+  +++ E LDDPF PE ILVQS GM+QWL+M L+ + G+AAN+
Sbjct: 1    MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60

Query: 61   EFPLPATFIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLPKLLDRTEFQPLQRYLQDDED 120
            +FPLPA+FIW MF +VLP++P+ SAFNK++MSW+LM LLP+LL+R +F  L+ YL DD D
Sbjct: 61   DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120

Query: 121  DSKRFQLAEKIADIFDGYLVYRPDWILSWEAGEDVVEIADQHPWQPILWRELYAYTHKQG 180
              K FQL+ K AD+FD YLVYRPDW+  WE G  V  + +   WQ  LW+ L  YTH+ G
Sbjct: 121  KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180

Query: 181  HSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLML 240
               +HRANLYQRFIE L S        P R+FI GISALPP Y+ AL+A+G+HI++HL+ 
Sbjct: 181  QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240

Query: 241  TNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQVTIGSEVSPLKGDVENYLQ-ESMHLS 299
            TNPC++YWGDI+D  YLA++  ++R+         +      PL  D EN  Q  +    
Sbjct: 241  TNPCRYYWGDIKDPAYLAKLLTRQRR--------HSFEDRELPLFRDSENAGQLFNSDGE 292

Query: 300  HAVGNSLLASMGKMGRDNLYLLAQNDQS-ELELFIEIQRDSLLHHIQADILHLQEHQ--- 355
              VGN LLAS GK+GRD +YLL+  + S EL+ F+++  D+LLH+IQ+DIL L+      
Sbjct: 293  QDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAG 352

Query: 356  -DDAKFASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMV 414
             +  +F+ S +K  +   D S+   +CHSP REVEVLHDRLLA  E DP+L PRD+IVMV
Sbjct: 353  VNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMV 412

Query: 415  PDINAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLE 474
             DI++Y+P+IQAVFG+AP +R++P++ISDR A Q  P+L AF+ LL+LP SR ++ ++L 
Sbjct: 413  ADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472

Query: 475  LLETPAIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERML 534
            LL+ P + ARF I EE     ++WV E+GIRWG++ D   E ELPA+ Q+TW+FG+ RML
Sbjct: 473  LLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRML 532

Query: 535  LGYAMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWR 594
            LGYAM +  G +    Q + PY++  G+ AEL G LA  +  L+  R  LAQ + +E+W 
Sbjct: 533  LGYAMESAQGEW----QSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWL 588

Query: 595  YWLNELLERCFSVDLQGELALKTIRDSLVNLKQQLADAGYQQAVSPAIIRQVLTNKLSGT 654
                ++L   F  D + E A+  I      +  +   A Y  AV  +++R  L  +L   
Sbjct: 589  PVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQE 648

Query: 655  RISQRFLAGQVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRSR 714
            RISQRFLAG VN CTLMPMRSIPF+ VCLLGMNDGVYP      GFDL + + + GDRSR
Sbjct: 649  RISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSR 708

Query: 715  REESRYLFLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDENLE 774
            R++ RYLFLEAL+SA+++LYISY+GRSIQDNSER PSVLV EL++Y  Q++ L GDE L 
Sbjct: 709  RDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALN 768

Query: 775  SDDSGRRLVEHLTTQYPMVPFSPQAFIAG---SFAREWLPAARRQGQSSADFLTPLSDYL 831
             D+S  R+  HLT  +  +PF PQ +  G   S+AREWLPAA + G++ ++F+ PL   L
Sbjct: 769  CDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTL 828

Query: 832  LEVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDE 891
                 P  + L  LQRFW  PV  FF+ RL+V+F    + + D EPF L+GLS YQ+  +
Sbjct: 829  -----PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQ 883

Query: 892  LVENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCH 951
            L+ N L  +D AER        ++ RA G LP  AFG++      Q+   LA+++   C 
Sbjct: 884  LL-NALVEQDDAER------LFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV-IACR 935

Query: 952  QPLEDEEIDLRLQPFDDGREVLLRGWLVKRYQSGLVRARSGAIRSEDLLAAWIDHLCLAA 1011
            QP +  EIDL          V + GWL +    GL+R R   +     +  W++HL   A
Sbjct: 936  QPGQSMEIDLAC------NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCA 989

Query: 1012 SGKAVTTHLIGYERKEGVQHQMLPPLNDAQQAKTLLSELVALFCQGMNQPLAYFPKTALA 1071
            SG    + L  + RK+G      PPL  A+QA   LS+L+  + +GM+ PL   P++  A
Sbjct: 990  SGGNGESRL--FLRKDG--EWRFPPL-AAEQALHYLSQLIKGYREGMSAPLLVLPESGGA 1044

Query: 1072 CVEAGF--SRGKWQEDE---EKSYKKMADTFNDSFYIKGEGGNRYIARIWPQWSDELAKT 1126
             ++  +        +D+   +K+  K    +  +  ++GEG + +  R+W Q + E  + 
Sbjct: 1045 WLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEA 1104

Query: 1127 L 1127
            +
Sbjct: 1105 I 1105