Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1172 a.a., RecBCD enzyme subunit RecB from Xanthobacter sp. DMC5

 Score =  109 bits (273), Expect = 1e-27
 Identities = 226/892 (25%), Positives = 350/892 (39%), Gaps = 158/892 (17%)

Query: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84
           + A+AG+GKT+ +A   +RL+L  G    R         IL +T+T+AA A + +R+   
Sbjct: 30  VSANAGSGKTHVLARRVIRLLLA-GTPPGR---------ILCLTYTKAAAANMANRVLAI 79

Query: 85  LHDARLAFARGASDDPLLRSLLAEFTDHNL---AVSLLLSAERQMDEAAIFTIHGFCQRM 141
           L   R A    A  D  +   + E  D  L   A  L  +A        I TIH FC  +
Sbjct: 80  L--GRWARMDDAVLDAAIAETVGEAPDDALRARARRLFAAALETPGGLKIQTIHAFCGGL 137

Query: 142 LTQNAFES----GSRFENEFVTDE--SRLKAQVVADYWRRQFYPLPISLASEVRRLWPAP 195
           L +  FE+    G R  +E    E  +R++A +V         P   +LA     +  + 
Sbjct: 138 LHRFPFEADVAAGFRELDEVARRELMARIRADLVVAASLAPASPAGEALARLTEEMSDSG 197

Query: 196 SALLAEIAGYLSGPPVKLTTPLME-GDLAALQQAQIAR---------ICEIKQHWLV--- 242
              L E A       V L T +   GD  A ++A +AR         + +++   L    
Sbjct: 198 LTGLIEAA-------VALRTRISPLGDTPAARRAAVARALGLPAGLTVTDVEAEMLASPH 250

Query: 243 ----EREEIEPAVTGSDL---HKNSQNALLRRLPILDAWAQSETHDLHVPSELEEFTQSG 295
               E E +   +  SD     K + +         DA A +    +   S+    +   
Sbjct: 251 LPRSEWESVAATLATSDKATDRKRADDLAAAAAAGDDASALAAYRGVFFGSDGPR-SDKN 309

Query: 296 LLAKSKKGNPPQL------------ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKA 343
           LL K      P L             L +R++A  A  +      L      CR + A+ 
Sbjct: 310 LLTKGMGTREPDLLARFTAERDRLAGLDDRLKA--AWTLERTGAALTLGAEACRRYEAE- 366

Query: 344 KSTHHWLSFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYL 403
           K+    L FDDL+T+ +AAL  ++   +  ++       ++DE QDT P Q+ +   L  
Sbjct: 367 KAARGLLDFDDLITK-AAALLAEQPTFVQFKLDQGIDHILVDEAQDTSPEQWKVVEGLTS 425

Query: 404 DY-----PQCG----LLMIGDPKQAIYAFRGADIFTYIKARN----QVNAH----YTLGT 446
           D+      + G    + ++GD KQ+I++F+GAD   +   R+    +V A       L  
Sbjct: 426 DFFSGEGARAGVTRTIFVVGDEKQSIFSFQGADPRAFGAMRSTFERKVGAEGFRRVELPH 485

Query: 447 NWRSSAAMVAAVNQVFSS-ATHPFIYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWW 505
           ++RS+  ++ AV+ +F S   H  +  D +   PV A+  AD           PAL   W
Sbjct: 486 SFRSAPGVLEAVDAIFKSEVAHAGLTLDGVG--PVHAAIRADA----------PALVEIW 533

Query: 506 PEDLDKPQSKTDYYAQMAEAC---------AAQIQHILTAS-ASGAATFHR-GEAIEAGD 554
           P  + +P  + D + +  +           AA+I   + A  A+G A   R G  + AGD
Sbjct: 534 PTTVPEPHPEPDNWRRPLDEVPSDDPVSRLAARIAGFIQAGIANGLAIPSRNGRPMRAGD 593

Query: 555 LAVLVRT-GNEARMVRDALSQQGIASVYLSNRDSVFASD--VAQDIERLLLAVWQPEDER 611
           + VLVR  G     V  AL +     V ++  D +   +   A D+  L  A+  P D+ 
Sbjct: 594 VLVLVRRRGRVFEAVIRALKELKDPRVQVAGADRLVVPEHIAALDLMALGDALLSPHDDL 653

Query: 612 LLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERGVLPMLRAVLTQ-RH 670
            L + + S LF  T  +L AL                       +G L  + A     RH
Sbjct: 654 SLASVLKSPLFGFTDDDLMALCPQR-------------------KGTLASVLATSDDTRH 694

Query: 671 IAER-----WLAESEGERWLTDYLHI-----------SELLQQATREIDSDQGLLRFLTQ 714
            A       W  E+EG R    Y  +           + L  +A   +D    L R    
Sbjct: 695 RAAAARLAGWKGEAEGLRPFDFYGRVLGRDGGRRAMLARLGPEAADVLDEFMALARTYEG 754

Query: 715 AMADAAQGL-----GGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFL--------PFV 761
           A   +  G       G  E  + +ES R  V+++T H +KGLE PLV L        P +
Sbjct: 755 AEPASLAGFLAFLRRGGAETKRDMESGRDEVRVMTAHGAKGLEAPLVILADTVDMPRPRI 814

Query: 762 MSYRESSEGKYYDAESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRA 813
                +  G+     +     D      A A A    L E  RL YVALTRA
Sbjct: 815 AGGLLTLPGEGVPVLAPRKAEDPEVLAAARATAAARELEEYRRLFYVALTRA 866