Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1224 a.a., exodeoxyribonuclease V subunit beta from Pseudomonas simiae WCS417

 Score =  717 bits (1851), Expect = 0.0
 Identities = 487/1238 (39%), Positives = 669/1238 (54%), Gaps = 79/1238 (6%)

Query: 15   LRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAAT 74
            L FPL G++LIEASAGTGKT+TI+ LYLRLVLGHG  E+     L   QILVVTFT+AAT
Sbjct: 8    LAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDESSFGRELLPPQILVVTFTDAAT 67

Query: 75   AELRDRIRRRLHDARLAFARGASD-DPLLRSLLAEFTDHN--LAVSLLLSAERQMDEAAI 131
             ELR+RIR RL +A   F       D L+  L A++         + L  A + MDEAA+
Sbjct: 68   KELRERIRIRLAEAARFFREEIEQPDALIADLRADYLPEQWPACANRLDIAAQWMDEAAV 127

Query: 132  FTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPISLASEVRRL 191
             TIH +CQRML ++AF+SGS F     TD S L  +V+ DYWR   YP+     + VR  
Sbjct: 128  STIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMHDDALNWVRSH 187

Query: 192  WPAPSALLAEI-AGYLSGPPVKLTTPLMEGDLAALQQAQIARICEIK---QHWLVEREEI 247
            W  P+AL+  + A + S  P   T    E   A LQ+ + A +  +K   Q W  E  +I
Sbjct: 188  WGGPAALMPRVRALFGSERPTDETREPAELITACLQERREA-LTTLKAPWQQWATELRDI 246

Query: 248  ---EPAVTGSDLHKNSQNALLRRLPILDAWAQSET-HDLHVPSELEEFTQSGLLAKSKKG 303
                 A    D  K            + AWA  ET   L + +     T  G+ A++ KG
Sbjct: 247  CLQAVAAKAVDGRKMQARYFEPWFEKISAWAADETLEQLDIGTGFTRLTPDGM-AEAWKG 305

Query: 304  NPPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKA----KSTHHWLSFDDLLTQL 359
             PPQ    + +    A   +L TP     + H   W+ K     K     + FDD+L +L
Sbjct: 306  EPPQHPGIDAMAGLKAALDALPTPDAA-VLQHAAGWVGKRFEEEKRRRAEMGFDDMLIRL 364

Query: 360  SAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYL---DYPQCGLLMIGDP 416
            +AAL  D    L   +R  +PVA+IDEFQDTDP+QYSIF  +Y    ++   GL +IGDP
Sbjct: 365  NAALQADGGERLASVVREQFPVALIDEFQDTDPVQYSIFDSIYRIEENHLDSGLFLIGDP 424

Query: 417  KQAIYAFRGADIFTYIKARNQVNA-HYTLGTNWRSSAAMVAAVNQVFSSATH---PFIYS 472
            KQAIYAFRGADI+TY++AR      H+TLGTN+RSS AMV AVN VF  A      F++ 
Sbjct: 425  KQAIYAFRGADIYTYLRARQSTTGRHHTLGTNFRSSHAMVEAVNHVFQRAETGRGAFLFR 484

Query: 473  DD-----IPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACA 527
            +      +PF  V +     K    ++GQ  PA+  W     D+P S   Y  Q+A ACA
Sbjct: 485  EPDGVNPVPFHSVLSQ--GRKEQLQVDGQTLPAMNLWHLPT-DQPVSNVIYRQQLAAACA 541

Query: 528  AQIQHILTASASGAATFHRGEA----IEAGDLAVLVRTGNEARMVRDALSQQGIASVYLS 583
              I  +L     G+A F + +     +   D+A+LVR G EA+ VR  L+ +G+ SVYLS
Sbjct: 542  THIVELLNGGQQGSAGFLQPDGSFKGVRPSDIAILVRDGKEAQAVRGELAARGVRSVYLS 601

Query: 584  NRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLI 643
            ++DSVFA+  A D+   L A  +P+ ER LRAA+A     L+ +EL+ LN DE  WE  +
Sbjct: 602  DKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLAELERLNQDELAWESRV 661

Query: 644  AEFRQYRRLWSERGVLPMLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREID 703
             +FR YR +W  +GVLPMLR +L    + +  +A S+GER LT+ LH+SELLQQA  E+D
Sbjct: 662  MQFRGYRTIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLLHLSELLQQAASELD 721

Query: 704  SDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMS 763
             +Q L+R L + +A + Q     +EQI RLES+ +LV++VTIHKSKGLEY LVFLPF+ S
Sbjct: 722  GEQALIRHLAEHLALSGQ---AGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICS 778

Query: 764  YRESSEGK---YYDAESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIG 820
             +     +   +Y  E+  + V L    E +A+AD ERLAEDLRL YVALTRA + C++G
Sbjct: 779  AKPVDGSRLPLHYHDENGKSHVSLRPTPELIAQADNERLAEDLRLFYVALTRAKHACWLG 838

Query: 821  IAPLRNGNSSQEPTSAHRSAMGFLLQDGQE-GGIADLQQALLKQCENLPDVVQCPPPKRF 879
            IA L+ GNS+   +  H SA+G+LL  G   G  A L + LL   E    +     P+  
Sbjct: 839  IADLKRGNSNN--SVLHLSALGYLLGAGASLGESAGLARWLLDLQEGCTAIHYGQVPEAQ 896

Query: 880  EQAYQPPQLDERELTAREL-SQAIDRRWRVTSYSGLVMQSS------HARHDPLQELPLL 932
            +  + PP+ +E  L A  L  +     W + SYS L +  S       A   P Q   L 
Sbjct: 897  DNLFHPPR-NEATLRAPLLPKRKAAENWWIASYSALRIGDSMSAATLEAPESP-QAQKLF 954

Query: 933  EVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKII 992
            +    D D+ +E     + +    I  FPRG  PGTFLH L E          E    + 
Sbjct: 955  DDERLDPDAPRE-----VAASGGDIHRFPRGPNPGTFLHGLLEWA-------GEDGFNVT 1002

Query: 993  LELME-------SEQIESEWLPVLQQLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLP 1045
             E +E       + +    W+  L   +  +L TPL      +      Q   E+EF   
Sbjct: 1003 PEAIEKAVGARCNRRNWEGWIITLSSWLGHLLQTPLPVNNSHVSLSGLQQYQIEMEFWFA 1062

Query: 1046 IEVLDAPTLNRIT--QRHDPLSAHAGDLGFHAVQGMLKGFIDLVFQYQGRYYVLDWKSNH 1103
               +D   L+++     H+ +S  A +     + GM KGFIDL F++ GRYYV D+KSN 
Sbjct: 1063 SHKVDVLALDKLVCQYTHNGVSRVAAEPVL--LNGMFKGFIDLTFEHDGRYYVADYKSNW 1120

Query: 1104 LGDDPAAYHPQRLGSAMAEHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRG 1163
            LG D +AY    +  ++ +HRYDLQY +Y LALHR L++RL  Y+Y++H GG  Y+FLRG
Sbjct: 1121 LGPDDSAYTFDAMEQSILDHRYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYIFLRG 1180

Query: 1164 MDGRGDQGVFHTKPSLALLDELDGLIAGRELAQRASKA 1201
                  QG + T+P   L++ LD L  G+ +  +   A
Sbjct: 1181 TQS-ASQGAYFTRPPRELIEGLDLLFQGKPIPPKVEPA 1217