Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 709 a.a., ATP-dependent DNA helicase UvrD/PcrA, proteobacterial paralog from Variovorax sp. SCN45

 Score = 54.7 bits (130), Expect = 3e-11
 Identities = 114/491 (23%), Positives = 179/491 (36%), Gaps = 96/491 (19%)

Query: 342 KAKSTHHWLSFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRL 401
           +AK   + L +DDLL   +  +   E   L   +   +   ++DE+QDT+ LQ SI   L
Sbjct: 222 EAKHRQNVLDYDDLLLYWAGMVAEPE---LAAHVGARFDHVLVDEYQDTNLLQASILLAL 278

Query: 402 YLDYPQCGLLMIGDPKQAIYAFRGADIFTYIKARNQVNAH---YTLGTNWRSSAAMVAAV 458
             D    G+ ++GD  Q+IY+FRGA +   +   +Q        TL  N+RS+  ++   
Sbjct: 279 KPDGR--GVTVVGDDAQSIYSFRGATVRNILDFPSQFTQDARVVTLERNYRSTQPILDVS 336

Query: 459 NQVFSSATHPFIYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDY 518
           N+V + A                      +RH         A T W     DKP +    
Sbjct: 337 NRVIAQAA---------------------ERH---------AKTLW----TDKPSAGKPL 362

Query: 519 YAQMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIA 578
              + +  A Q + +     +     HR   +     AVL RT   +  +   L+++ I 
Sbjct: 363 LVLVPDE-AGQARWV-----ADKVLAHREGGLALKSQAVLFRTSTHSAALELELARRNIP 416

Query: 579 SVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENE 638
            V       + AS V +D+  +L     P   R+    V   +  +       L +  ++
Sbjct: 417 FVKFGGLKFLEASHV-KDLLAVLRFAQNPRG-RMAGFRVTQLIPGIGPVTGTRLLDAMDQ 474

Query: 639 WEQLIAEFRQY------RRLWSERGVLPMLRAVLTQRHIAERWLAESE-GERWLTDYLHI 691
               +A  R +      R  W++        A    R  A  W A+ E    W   +L  
Sbjct: 475 AADPVAAVRDFVPPSAARAQWAD-----FATAYEALRSPALEWPADVEVAMAWYQPHLER 529

Query: 692 SELLQQATREIDSDQ---------GLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQI 742
                   R  D +Q            RFLT+   D  +    SD     L  E  L+ +
Sbjct: 530 LYEDTSGVRRADVEQLARLAAGYGSRERFLTELTLDPPEAT--SDRPGPPLLDEDYLI-L 586

Query: 743 VTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESATTWVDLTGNEEALAKADQERLAED 802
            TIH +KG E+  V +  V+                       G   A        L E+
Sbjct: 587 STIHSAKGQEWNSVHVLNVVD----------------------GCLPADVAQSAHELEEE 624

Query: 803 LRLLYVALTRA 813
            RLLYVA+TRA
Sbjct: 625 RRLLYVAMTRA 635



 Score = 27.3 bits (59), Expect = 0.005
 Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 16/112 (14%)

Query: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83
           L+ A AG+GKT T+A     L+ G           +   ++L++TF+  A  E+     R
Sbjct: 55  LVIAGAGSGKTSTLAHRVAHLIAG----------GVDPQRLLLLTFSRRAAQEM----GR 100

Query: 84  RLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIH 135
           R            S+ P   SL    T H +   LL     Q+     FTIH
Sbjct: 101 RAGQVLTKVLGLKSEAP--PSLPWAGTFHGIGARLLREYAAQIGLDENFTIH 150