Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 700 a.a., ATP-dependent DNA helicase Rep from Variovorax sp. SCN45

 Score = 59.7 bits (143), Expect = 8e-13
 Identities = 107/469 (22%), Positives = 185/469 (39%), Gaps = 84/469 (17%)

Query: 383 MIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIYAFRGA--DIFTYIKARNQVNA 440
           ++DE+QDT+  QY +   L  +        +GD  Q+IY +RGA  D    +        
Sbjct: 209 LVDEYQDTNATQYEVLKALAGERGH--FTAVGDDDQSIYGWRGATLDNLRKLPVDFPTLK 266

Query: 441 HYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVAASPGADKRHWSLEGQVQPA 500
              L  N+RS++A++ A N V       F                  K  +S  G+ +P 
Sbjct: 267 VIKLEQNYRSTSAILRAANNVIGPNPKLF-----------------PKTLFSELGEGEPV 309

Query: 501 LTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVR 560
                  +L +           AE   A+I  +     +G AT    +  E  D A+L R
Sbjct: 310 RIVDADSELHE-----------AERAVARIVSL----RAGDATTQGKQYKEFRDFAILYR 354

Query: 561 TGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVAS- 619
             ++AR+   AL +  I       +     +++        L V   +D   LRA     
Sbjct: 355 ANHQARVFEQALRKAQIPYKVSGGQSFFDRAEIKDLCGWFRLWVNNDDDPAFLRAITTPK 414

Query: 620 --------------------NLF-ALTASELDALNNDE-----NEWEQLI--AEFRQYRR 651
                               +LF AL +  L ++         +E+ + I   E+R  R 
Sbjct: 415 RGIGHTTLASLGSFASQYKLSLFEALFSPSLPSVMPKRTLEGIHEFGRYINDLEYRARRT 474

Query: 652 LWSERG---VLPMLRAVLTQRHIAERWLAESEG-ERWLTDYLHISELLQQATREIDSDQG 707
           + +E     +L  L+ +  ++H+ +   +ES    RW      +  + Q+A   ID   G
Sbjct: 475 MGAEDSRTFMLDWLKEIDYEKHLYDGEDSESAAASRWTNVLEFVDWMSQRAGGTIDDTSG 534

Query: 708 L---LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSY 764
               +    +++ + AQ +       +R + ++ +V + T+H SKGLE+P V L  V   
Sbjct: 535 ADNPIETERKSLLEVAQTISLLSTISER-QQDQDVVTLSTLHASKGLEWPHVMLIGV--- 590

Query: 765 RESSEGKYYDAESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRA 813
              SEG            D  G ++ +++   +RL E+ RL+YV +TRA
Sbjct: 591 ---SEGLL-----PFKLDDDNGRQQKVSEDTLQRLQEERRLMYVGITRA 631



 Score = 33.1 bits (74), Expect = 8e-05
 Identities = 52/200 (26%), Positives = 78/200 (39%), Gaps = 36/200 (18%)

Query: 19  LHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELR 78
           ++G  L+ A AG+GKT  I     RL+             L   +I  +TFT  A AE+R
Sbjct: 16  MYGPCLVLAGAGSGKTRVITHKIGRLI----------QSGLEPQRIAAITFTNKAAAEMR 65

Query: 79  DRIRRRL-HDARLAF--------ARGASDDPLLRSLLAEFT--DHNLAVSLLLSAERQMD 127
           +R +  +  DAR            R   +D  +  L   F+  D +    +L  A    D
Sbjct: 66  ERAKDLIGKDARKVVVCTFHALGVRMMREDGAVLGLKKAFSILDSDDVTKILKDAGGTTD 125

Query: 128 EAAI----FTIHGFCQRMLTQNAFESGSRFENEFVTD------ESRLKAQVVADYWRRQF 177
            A      +TI  +    L     E+ +  +NE +T       E RL+A    D+     
Sbjct: 126 IATARIWQWTISKWKNMGLNAKQAEAAAVDDNERITARIMAHYEERLQAYQSVDF--DDL 183

Query: 178 YPLPISLA---SEVRRLWPA 194
             +P+ L     EVR  W A
Sbjct: 184 IGMPLKLLYEFPEVRAKWQA 203