Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1086 a.a., UvrD/REP helicase from Variovorax sp. SCN45

 Score = 60.8 bits (146), Expect = 6e-13
 Identities = 228/1039 (21%), Positives = 372/1039 (35%), Gaps = 196/1039 (18%)

Query: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84
           +EA AG GKT+ +    LR +L  G +           +IL +TFT+ A  E    +R R
Sbjct: 31  VEACAGAGKTWMLVSRILRALLEEGDSACEP------HEILAITFTKKAAGE----MRER 80

Query: 85  LHDARLAFARGASDDPLLRSLL--AEFTDHNLAVSLLLSAERQMDEAA----IFTIHGFC 138
           L      F     ++ + + ++   E      AV  L    R++ E        T H + 
Sbjct: 81  LDQWLEDFVERTPEELVAQLVMRGVEPAAALAAVPRLKGLYRRLLEGGRPVQFRTFHAWF 140

Query: 139 QRMLTQNAF----ESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPI---SLASEVRRL 191
             +L         E G     E + D++  ++      WR  F  +     +LA     +
Sbjct: 141 AGLLRNAPLAVLRELGLPSNYELLEDDAEARSHT----WRPFFEAVTADRNALADYYAVV 196

Query: 192 WPAPSALLAEIAGYLSGPPVKLTTPLMEG----------DLAALQQAQIA-RICEIKQHW 240
                +  A+  G      V+ +    E            L  L++   A R   ++Q W
Sbjct: 197 ATHGRSQTAKALGEALSKRVEFSLADAENAVQHFSAFYPSLDGLEEPTDALRGSAVRQRW 256

Query: 241 LVEREEIEPAVTGSDLHKNSQNALLRRLPILDAWAQSETHDLHVPSELEEFTQSGLLAKS 300
           L        A  G + +K  Q A      I+D +   E     +P+ L    ++  +A  
Sbjct: 257 LDRA-----AALGKESNKTPQKAAEA---IIDIFGTGEPEAGALPAALAHLRKNFFVATE 308

Query: 301 KKGNPPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWL----------------AKAK 344
            + N   L  F   +   AE   L      HA      WL                A  K
Sbjct: 309 DRLNK-NLQKFPAAQEAEAELQVLCGAQAQHAA-----WLYQQRMTRLTRILIAAFADVK 362

Query: 345 STHHWLSFDDLLTQLSAALDNDE-QGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYL 403
             H W+  +D+       L      G + ER+       +IDEFQDT+PLQ+        
Sbjct: 363 RAHGWVDMNDVEQAAQLLLGQSALSGWVQERLDARIAHLLIDEFQDTNPLQWQALYGWLS 422

Query: 404 DYPQCG-----LLMIGDPKQAIYAFRGADIFTYIKARNQV---------NAHYTLGTNWR 449
            Y         + ++GDPKQ+IY FR A+   +I A+  V         N  +T     R
Sbjct: 423 AYTGAQGRAPRVFIVGDPKQSIYRFRRAEPQVFIAAKKFVREGLDGELLNCDHT----HR 478

Query: 450 SSAAMVAAVNQVFSSA----------THPFIYSDDIPFQPVAA----SPGADKRHWSLEG 495
           ++ A+V  VN    +A           H     D+     + A    + GA +   + +G
Sbjct: 479 NARAVVGLVNSAMLAAQDAGEFDGYRAHTTERKDEGELLKLPAIDRDALGAAEAAPADDG 538

Query: 496 QVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTASASGAATFHRGEAIEAGDL 555
            +       W + L  P+   +      E C    Q +    A G              +
Sbjct: 539 MLH------WRDSLVTPRVLPEEQLLQKE-CEQAAQWVAQRIADGT---------PPRQI 582

Query: 556 AVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRA 615
            VL R  +    ++DAL Q+ I  V    ++ +  +   QD+  L+ A+  P  +  L  
Sbjct: 583 MVLARRRSRLSAMQDALRQRHI-PVQQPEKNELHDAPEVQDVVALIDALVSPAHDLSLAR 641

Query: 616 AVASNLFALTASELDALNNDENE-----WEQLIAEFRQYRRLWSERGV-----------L 659
           A+ S +F +    L  L   + E     W  LI +        +E GV           L
Sbjct: 642 ALKSPVFGIGDDALVQLALRQRERPSFNWFSLIQKSEDLPAELTEAGVKLRKWQRWLMTL 701

Query: 660 P---MLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREIDSDQGLLRFLT-QA 715
           P    L A+     +  ++ A        +   ++  +L   T  +D D    RF T  A
Sbjct: 702 PPHDALDAIFNDGDLLAKFGAAVPAPMRQSALANLRGVL---TASLDIDGA--RFTTPYA 756

Query: 716 MADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFL-----PFVMSYRESSEG 770
           +  + +  G     +   ++    VQ++T+H +KGLE   V +     P   +       
Sbjct: 757 LVRSLRAGGVRAPSVAAPDA----VQLLTVHGAKGLEADTVLMLDCDAPPPRAQTMGVLV 812

Query: 771 KYYDAESATTWVDLTGNEE-----ALAKADQERLA---EDLRLLYVALTRAVYGCFI-GI 821
           ++  ++SA T      +E+     A A  ++E+ A   E+L  LYVA TRA     +  +
Sbjct: 813 EWKGSDSAPTRFVFLASEKTPPACAAALLEEEQRARHREELNGLYVATTRARERLVLSSV 872

Query: 822 APLRNGNSSQ--------EPTSAHRSAMGFLLQDGQEGGIADLQQALLKQCENLPDVVQC 873
            P R    S         EPT A    +    + G  G  +      +K+    P  V+ 
Sbjct: 873 RPARANEGSWWTRLEPLCEPTEADEPLVALPTESG-AGSFS------MKKMPEAPVPVEV 925

Query: 874 PPPKRFEQAYQPPQLDERELTARELSQAIDR--RWRVTSYSGLVMQSSHARHDPLQELPL 931
           P  ++   A     +D R   A    QA+ R   W V    G  + ++H R    +    
Sbjct: 926 PSTRK---AAATATVDAR---AAAFGQAMHRLLEWAV---PGEPLPAAHVRAAARE---- 972

Query: 932 LEVGGFDLDSAQERDGAAL 950
                F LD+ Q R  AAL
Sbjct: 973 -----FMLDAQQARGAAAL 986