Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1136 a.a., FIG061771: ATP-dependent nuclease subunit A from Sphingobium sp. HT1-2

 Score =  100 bits (249), Expect = 7e-25
 Identities = 209/873 (23%), Positives = 335/873 (38%), Gaps = 127/873 (14%)

Query: 20  HGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRD 79
           H    + ASAGTGKT+ +     RL+L            +  + IL +TFT+A  AE+ D
Sbjct: 26  HAHVWLSASAGTGKTHVLTARVFRLLL----------QGVRPENILCLTFTKAGAAEMAD 75

Query: 80  RIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAA---IFTIHG 136
           RI  RL     A  R   +D  L +L  E        +  L AE          I TIHG
Sbjct: 76  RIHDRLATWVQAEERDLFND--LEALGEESGPEARDRARRLFAEVLESTGGGLRIQTIHG 133

Query: 137 FCQRMLTQNAFES--GSRFENEFVTDESRLKAQVVADYWRRQ-----------FYPLPIS 183
           FCQ++L     E+     F      ++  L  Q +AD   R               L + 
Sbjct: 134 FCQQLLASFPLEADLAPGFRPLDAREQGVLARQTLADMVIRAEELGDGDLIDALQALSLR 193

Query: 184 LASEVRRLW----PAPSALLAEIAGYLSGPPVKLTTPLMEGDLAA--LQQAQIARICEIK 237
           L       +     A  + L E+ G + GP +     L EGD+ A    Q   A      
Sbjct: 194 LGEGAAETFLLRCAARLSALTELPGDI-GPWLARELGLPEGDIDAWLADQCSDAMFDMRS 252

Query: 238 QHWLVEREEIEPAVTGSDLHKNSQNALLR-RLPILDAWAQSETHDLHVPSELEEFTQSGL 296
             W+ +        TG  L +  + A  R R P   A   ++ H     ++       G 
Sbjct: 253 LAWVAQANA--DWGTGRALERCDRIAAWRGRDPAARAATLTDLHGAWAKAD-------GD 303

Query: 297 LAKSKKGNPPQLALFE---RIEAFLAEPVSLK-----TPLLVHAIHHCRHWLA---KAKS 345
           L  +K   PP     E   R+ A  AE + +K       LL  A+H  R +     +AK 
Sbjct: 304 LISAKGWVPPIDGYGEATARLHARCAELIGVKLQADYAALLARALHAGRAYARAYDEAKR 363

Query: 346 THHWLSFDDLLTQLSAALDNDE-----QGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSR 400
               + FDDL+ + ++ L  +      +  L +RI  +    ++DE QDT+  Q++I   
Sbjct: 364 LAGAVDFDDLIARTASLLQKEGIAEWIRYKLDQRIDHI----LVDEAQDTNVHQWAIVGA 419

Query: 401 LYLDY---------PQCGLLMIGDPKQAIYAFRGADIFTYIKARNQVNAH---------- 441
           L  ++             +  +GD KQAI+ F+G     +  A+   + H          
Sbjct: 420 LAAEFFAGDGAKADKVRTIFTVGDFKQAIFGFQGTSPQAFAAAQMVFSRHADMAGHVFHD 479

Query: 442 YTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVAASPGADKRHWSLEGQVQPAL 501
            +L  ++RS+  ++  V++  ++          +  Q +  S G + RH  +     P  
Sbjct: 480 LSLDRSFRSTPPVLDLVDRTIAT----------LRAQSLGLSDG-EVRH--ISANRHPGD 526

Query: 502 TYWWPEDL----DKPQSKTDYYAQMAEACAAQIQHILTASASGAATFH-RGEAIEAGDLA 556
              W   +    D+ + + D+ A      A +I   +            RG  +  GD+ 
Sbjct: 527 VLLWKPTIAGLADEVEGEEDWVADQERELAGKIARQIRQWIDDKMMLEARGRPVRPGDIM 586

Query: 557 VLVRTGNE-ARMVRDALSQQGIASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRA 615
           +LVR  +E AR++   L ++ +A   + +R  + A    +D+   L    QP+D+  L A
Sbjct: 587 ILVRRRSELARLIVARLYEEKVAVAGI-DRLRLNAPLAVRDLLAALRFATQPDDDLNLAA 645

Query: 616 AVASNLFALTASEL--DALNNDENEWEQLIAEFRQYRRLWSERGVLPMLRAVLTQRHIAE 673
            + S L   T  EL   A+      W  L+       +L   R +L         R++  
Sbjct: 646 LLVSPLIGWTQDELMERAIGRKSGLWRHLLQRLDD-AQLLPLRQLLGQADFTTPYRYLEA 704

Query: 674 RWLAESEGERWLTDYLH------ISELLQQATR-EIDSDQGLLRFLTQAMADAAQGLGGS 726
                 +G R L + L       I ELL  A   E D    L RF+            G 
Sbjct: 705 ILSGPMDGRRRLIERLGAEAADPIEELLNAALGFEADDHPSLQRFIDWFDR-------GE 757

Query: 727 DEQIQRLESERRLVQIVTIHKSKGLEYPLVFL------PFVMSYRESSEGKYYDAESATT 780
            E ++   ++   ++++T+H +KGL+ P+V L      P   +  +S E       +   
Sbjct: 758 VEIVRDAAAQGDALRLLTVHGAKGLQAPIVILADACLDPDAGNRLDSLEWNGLPILAPRK 817

Query: 781 WVDLTGNEEALAKADQERLAEDLRLLYVALTRA 813
              +    E  A A      E  RLLYVALTRA
Sbjct: 818 GERIGPIGEVAADAAAIEREEHWRLLYVALTRA 850