Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1224 a.a., Chi activated ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease from Pseudomonas putida KT2440

 Score =  750 bits (1936), Expect = 0.0
 Identities = 494/1223 (40%), Positives = 665/1223 (54%), Gaps = 68/1223 (5%)

Query: 15   LRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAAT 74
            L FPLHG++LIEASAGTGKT+TI+ LYLRL+LGHG  E      L   QILVVTFT+AAT
Sbjct: 9    LSFPLHGSQLIEASAGTGKTFTISALYLRLILGHG-GEQGFERELLPPQILVVTFTDAAT 67

Query: 75   AELRDRIRRRLHDARLAFARGASD--DPLLRSLLAEFTDHNL--AVSLLLSAERQMDEAA 130
             ELR+RIR RL +A   F RG  +  DPLL  L  ++   N       L  A + MDEAA
Sbjct: 68   KELRERIRARLAEAA-RFFRGELEGADPLLHQLRDDYPQENWPRCAGRLEIAVQWMDEAA 126

Query: 131  IFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPISLASEVRR 190
            + TIHG+CQRML ++AF+SGS F     TD S L  QV+ DYWRR  Y +     + VR 
Sbjct: 127  VSTIHGWCQRMLREHAFDSGSLFTQTLETDHSELLGQVMRDYWRRFCYGMQGDALAWVRG 186

Query: 191  LWPAPSALLAEIAGYLSGPPVKLTTPLMEGDLAALQQAQIARICEIKQHWLVEREEIEP- 249
             W +P ALL  I         +   P     + A  Q + A++  IK  W    EE+   
Sbjct: 187  NWGSPDALLPRIRPLFGRVRAQQNGPEPAALIQASLQQRGAQLARIKAPWAQWAEELRQI 246

Query: 250  -----AVTGSDLHKNSQNALLRRLPILDAWAQSETH-DLHVPSELEEFTQSGLLAKSKKG 303
                 A    D  K            L AWA  E   +L + +     T +G+ A++ KG
Sbjct: 247  CRDALAAKQVDGRKMQARYFEPWFDKLCAWASDEQLVELDLGTGFTRLTPAGM-AEAWKG 305

Query: 304  NPPQ---LALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLS 360
             PP+   L   + ++  L    S   PLL HA           K     + FDD+L +L 
Sbjct: 306  EPPEHPALNAMQHLQQQLQALDSPDAPLLEHAASWVSARFEVEKRRRAEMGFDDMLVRLQ 365

Query: 361  AALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYL---DYPQCGLLMIGDPK 417
             AL ++    L   IR  +PVA+IDEFQDTDP+QY IF R+Y    +  + GL MIGDPK
Sbjct: 366  HALASEAGERLASLIREQFPVALIDEFQDTDPVQYGIFERIYQISENRAETGLFMIGDPK 425

Query: 418  QAIYAFRGADIFTYIKARNQVNAH-YTLGTNWRSSAAMVAAVNQVFSSA--------THP 468
            QAIYAFRGADI+TY+ AR   +   ++L TN+RSS AMVAAVNQVF  A           
Sbjct: 426  QAIYAFRGADIYTYLAARRATSGRLHSLDTNYRSSKAMVAAVNQVFLQAEAREAGRGAFL 485

Query: 469  FIYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAA 528
            F  +DD P   +            ++G+V  AL  W  E  ++P S + Y  QMA +CA+
Sbjct: 486  FREADDNPLPFIEVRAKGRGEQLLIDGEVSAALQCWQLES-EEPVSSSVYRQQMAASCAS 544

Query: 529  QIQHILTASASGAATFHRGE----AIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSN 584
             I  +L     G + F   E    A    D+A+LVR G+EA+MVR  L+ + + SVYLS+
Sbjct: 545  HIVALLNGGQQGTSGFRNAEGELRACLPSDIAILVRDGHEAQMVRAELAAREVRSVYLSD 604

Query: 585  RDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIA 644
            +DSVFA+  A D+   L A  +P+ ERLL+AA+AS    L+ + LD LN DE  WE  + 
Sbjct: 605  KDSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLAALDRLNQDERVWESWVM 664

Query: 645  EFRQYRRLWSERGVLPMLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREIDS 704
             FR YR  W  +GVLPMLR +L    +    +  S+GER LT+ LH++ELLQQA  E+D 
Sbjct: 665  RFRLYRDTWQRQGVLPMLRHLLHDFQLPRTLIRRSDGERVLTNLLHLAELLQQAAGELDG 724

Query: 705  DQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSY 764
            +Q L+R L + +A + Q     +EQI RLES+ +LV++VTIHKSKGLEYPLV+LPF+ + 
Sbjct: 725  EQALIRHLAEHLASSGQ---AGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYLPFICTS 781

Query: 765  RESSEGK----YYDAESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIG 820
            +     +    ++D+E     + LT ++E + +AD ERLAEDLRLLYVALTRA + C++G
Sbjct: 782  KPVDGSRLPLAWHDSE-GNAHLTLTPDQEQIERADDERLAEDLRLLYVALTRAQHACWLG 840

Query: 821  IAPLRNGNSSQEPTSAHRSAMGFLLQDG----QEGGIADLQQALLKQCENLPDVVQCPP- 875
            +A L+ GN   + +  HRSA G+LL  G        + D  QAL   C +    + CP  
Sbjct: 841  VADLKRGN--LKSSQLHRSAFGYLLGGGLALAGSAQLTDWLQALAASCPH----ITCPGL 894

Query: 876  PKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPLLEVG 935
            P+  EQ Y+ P  +   L AR    A    W + SYS L +       D  Q   LL+  
Sbjct: 895  PQADEQMYRMPHAERELLPARRPRHAAAEHWWIASYSALRVGDQTLGADSSQAQQLLDDE 954

Query: 936  GFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILEL 995
              D    +E     + +    I  FPRG  PGTFLH L E    +  +    N ++I   
Sbjct: 955  VPDAQVLRE-----VPADSGDIHRFPRGPNPGTFLHGLLEWAGREGFSEVSANPQLIERT 1009

Query: 996  ME---SEQIESEWLPVL----QQLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEV 1048
            +    + +  + W+P L    Q+L+   L  P   +++ L Q+   Q   E+EF      
Sbjct: 1010 VGQRCNRRDWAGWIPTLSHWMQRLLSEALPLPGSDQSVTLGQLRHYQ--IEMEFWFASHR 1067

Query: 1049 LDAPTLNRITQRHDPLSAHAGDLGFHAVQGMLKGFIDLVFQYQGRYYVLDWKSNHLGDDP 1108
            +DA  L+R+  RH              + GM KGFIDL F+  GRYYV D+KSN LG D 
Sbjct: 1068 VDAEQLDRLVARHTHPGLARPAAQPTVLNGMFKGFIDLAFELDGRYYVTDYKSNWLGADI 1127

Query: 1109 AAYHPQRLGSAMAEHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRGMDGRG 1168
             AY    +  A+ EHRYDLQY +Y LALHR LR+RLA Y+Y++H GG  ++FLRG    G
Sbjct: 1128 QAYDAMAMEKAILEHRYDLQYVLYLLALHRQLRARLADYDYDRHVGGALFIFLRGASSSG 1187

Query: 1169 DQGVFHTKPSLALLDELDGLIAG 1191
              GV+H KP   L++ LD L  G
Sbjct: 1188 -HGVYHAKPPRELIESLDALFRG 1209