Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1229 a.a., RecBCD enzyme subunit RecB from Pseudomonas sp. RS175

 Score =  711 bits (1835), Expect = 0.0
 Identities = 476/1221 (38%), Positives = 668/1221 (54%), Gaps = 60/1221 (4%)

Query: 15   LRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAAT 74
            L FPLHG++LIEASAGTGKT+TI+ LYLRLVLGHG   T     L   QILVVTFT+AAT
Sbjct: 9    LAFPLHGSQLIEASAGTGKTFTISALYLRLVLGHGGPATGFGRELLPPQILVVTFTDAAT 68

Query: 75   AELRDRIRRRLHDARLAFARGA-SDDPLLRSLLAEFTDHN--LAVSLLLSAERQMDEAAI 131
             ELR+RIR RL +A   F     + D L+  L  EF + +     + L  A + MDEAA+
Sbjct: 69   KELRERIRTRLAEAARFFRDEIPAPDSLIVQLRGEFAEEHWPACANRLDIAAQWMDEAAV 128

Query: 132  FTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPISLASEVRRL 191
             TIH +CQRML ++AF+SGS F     TD S L  +V+ DYWR   Y +     + VR  
Sbjct: 129  STIHSWCQRMLREHAFDSGSLFTQTLETDHSELLGEVLRDYWRMFCYSMQGEALNWVRAH 188

Query: 192  WPAPSALLAEIAGYLSGPPVKLTTPLMEGDLAALQQAQIARICEIK---QHWLVEREEI- 247
            W  P++LL  + G  +        P     +AA  + + A + ++K   + W VE  EI 
Sbjct: 189  WGGPASLLPRVKGLFASEHGNGEGPEPAELIAASLRERSAALLDLKAPWRQWAVELLEIC 248

Query: 248  EPAVTGS--DLHKNSQNALLRRLPILDAWAQSETHDL-HVPSELEEFTQSGLLAKSKKGN 304
            +  V     D  K            + AW + E+ +L  + +     T  G+ A++ KG 
Sbjct: 249  QQGVANKLVDARKMQARYFEPWFQKISAWVEDESVELLDIGTGFTRLTPEGM-AQAWKGE 307

Query: 305  PPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKA----KSTHHWLSFDDLLTQLS 360
             P     + +    A   +L TP     + H   W+       K     + FDD+L +L 
Sbjct: 308  VPSHPGLDAMVGLKASLEALPTPDAA-VLQHAAQWVGARFEAEKRRRAEMGFDDMLLRLD 366

Query: 361  AALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYL---DYPQCGLLMIGDPK 417
            AAL  +    L   IR  +PVA+IDEFQDTDP+QY IF  +Y    + P+ GL +IGDPK
Sbjct: 367  AALQAEGGERLASLIREQFPVALIDEFQDTDPVQYRIFESIYRIEGNNPETGLFLIGDPK 426

Query: 418  QAIYAFRGADIFTYIKARNQVNAH-YTLGTNWRSSAAMVAAVNQVFSSATH------PFI 470
            QAIYAFRGADI TY++AR       +TLGTN+RSS AMV AVN VF  A         F+
Sbjct: 427  QAIYAFRGADIHTYLRARVATAGRLHTLGTNFRSSHAMVGAVNHVFQYAESRPQGRGAFL 486

Query: 471  Y-----SDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEA 525
            +     ++ +PF PV +          + GQ   A+  W     ++P S   Y   MA A
Sbjct: 487  FREASGNNPVPFLPVESQ--GRNEFLQIAGQAVTAMNIWHLPS-EQPLSGAVYRQNMAAA 543

Query: 526  CAAQIQHILTASASGAATFHRGEAIEA----GDLAVLVRTGNEARMVRDALSQQGIASVY 581
            CA+ I  +L    +G   F   E++       D+A+LVR G EA+ VRD LS +G+ SVY
Sbjct: 544  CASAITGLLNGGQAGRNGFMDPESVLRRLLPADIAILVRDGKEAQAVRDELSARGVRSVY 603

Query: 582  LSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQ 641
            LS++DSVFAS  A+D+   L A  +P+ ER LRAA+AS    L  +EL+ LN DE  WE 
Sbjct: 604  LSDKDSVFASQEARDLLIWLKACAEPDVERPLRAALASITLNLPLTELERLNQDELVWEA 663

Query: 642  LIAEFRQYRRLWSERGVLPMLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATRE 701
             + +FR YR +W  +GVLPMLR +L    + +  +A S+GER LT+ LH+ ELLQQA  E
Sbjct: 664  RVMQFRGYRTVWRTQGVLPMLRRLLHDFELPQALMARSDGERVLTNLLHLCELLQQAAGE 723

Query: 702  IDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFV 761
            +D +Q L+R L++ +A + Q    ++EQI RLES+ +LV++VTIHKSKGLEYPLVFLPF+
Sbjct: 724  LDGEQALIRHLSEHLALSGQ---AAEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFI 780

Query: 762  MSYRESSEGK---YYDAESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCF 818
             S +     +   +Y  ES    V L    E +A+AD+ERLAEDLRLLYVALTRA + C+
Sbjct: 781  CSTKPVDGTRLPLHYHDESGRAQVSLRPTVELIARADEERLAEDLRLLYVALTRAQHACW 840

Query: 819  IGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQEGGIADLQQALLKQCENLPDVVQCPP-PK 877
            +G+A L+ G  S   +  H SA+G+LL  G     +   +  L+  +     V C   P 
Sbjct: 841  LGVADLKRG--SNNTSILHLSALGYLLGGGTPLADSVELKRWLEDLQQGSATVSCQEMPL 898

Query: 878  RFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGL-VMQSSHARHDPLQELPLLEVGG 936
              ++ YQPP+ +       + ++     W + SYS L + +S  A  D   E P  +   
Sbjct: 899  ATDEHYQPPRSEAVLREPLKPARKASENWWIASYSALRIGESLSAGSDAAPEDPQAQ-KL 957

Query: 937  FDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILELM 996
            FD +        A+      I  FPRG  PGTFLH L E +  +  A +    + ++   
Sbjct: 958  FDDERLDPEAPRAVAVAGGDIHRFPRGPNPGTFLHGLLEWIAGEGFAAAPSVIEDVIARR 1017

Query: 997  ESEQIESEWLPVLQQLVDTVLSTPLDGKALRLQQIMA--AQRLTELEFLLPIEVLDAPTL 1054
             + +    W+  L   +  +++ PL   + +   ++A   Q   E+EF      +D   L
Sbjct: 1018 CNRRGWKGWITTLNDWLQHLVALPLQIGSNQAPVVLAHLDQFQVEMEFWFASHKVDVLKL 1077

Query: 1055 NRITQRHDPLSAHAGDLGFHA----VQGMLKGFIDLVFQYQGRYYVLDWKSNHLGDDPAA 1110
            +++  +      H G     A    + GM KGFIDL F++ GRYYV D+KSN LG D AA
Sbjct: 1078 DQLVCQF----THGGVARVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGADDAA 1133

Query: 1111 YHPQRLGSAMAEHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRGMDGRGDQ 1170
            Y  Q +  ++ ++RYDLQY +Y LALHR L++RL  Y+Y++H GG  YLFLRG      Q
Sbjct: 1134 YTSQAMEQSILDNRYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYLFLRGTRAT-SQ 1192

Query: 1171 GVFHTKPSLALLDELDGLIAG 1191
            GV+ T+P+ AL+++LD L  G
Sbjct: 1193 GVYFTRPARALIEQLDRLFQG 1213