Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1117 a.a., ATP-dependent DNA helicase pcrA (EC 3.6.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 56.2 bits (134), Expect = 1e-11
 Identities = 163/745 (21%), Positives = 265/745 (35%), Gaps = 142/745 (19%)

Query: 307  QLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWL----------------AKAKSTHHWL 350
            +LA  E + A  A+ ++L+T   + A+   R WL                A  K    W+
Sbjct: 308  KLAGIEAVRA--AQELALRT---LEALRQHRAWLHHQRLSRLARVLLTCFAAFKRERGWV 362

Query: 351  SFDDLLTQLSAALDNDE-QGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCG 409
              +D+       L + E  G L +R+       +IDEFQDT+PLQ+         Y   G
Sbjct: 363  DMNDVEGAARRLLGDAELSGWLQQRLDARVRHVLIDEFQDTNPLQWQALYGWLSAYAGAG 422

Query: 410  ------LLMIGDPKQAIYAFRGAD--IFTYIKA---RNQVNAHYTLGTNWRSSAAMVAAV 458
                  + ++GDPKQ+IY FR A+  +F   +A   +    A  +     R + A+V A+
Sbjct: 423  PGEAPCVFLVGDPKQSIYRFRRAEPQVFKAAQAFVVQGLAGALLSCDHTRRCAPAVVDAL 482

Query: 459  NQVFSSATHPFIYSDDIPFQPVAASPGAD----------KRHWSLEGQVQPALTYWWPED 508
            N    +A     Y  D       ++   +              S  GQ    +   W + 
Sbjct: 483  NAAMGAAVQAGEYGSDYRTHTTESTAHGEVLCLPQLPRSLLERSAAGQGDGPV---WRDS 539

Query: 509  LDKPQSKTDYYAQMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMV 568
            L  P+   +      EA  A         A   AT      +   D+ VL R       +
Sbjct: 540  LITPRVLPEDSLAALEAAQA---------ADWIATEVGDGRLLPDDIMVLSRRRERLAWM 590

Query: 569  RDALSQQGIASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASE 628
             +AL ++G+AS     +  +  +   QD+  LL A+     +  L  A+ S L   +  +
Sbjct: 591  HEALLERGLASEQ-PEKLELGEAPAVQDVVALLDALVSTRHDLSLARALKSPLCGWSDDD 649

Query: 629  LDALNNDENEWEQLIAEFRQYRRL---W---------------SERGVLPMLRAVL--TQ 668
            L  L      W     E     R+   W               +     P   +++  T 
Sbjct: 650  LAQLARWRVRWTAPRTEGADQPRIRLSWWDVLQRFAGLSADEQAAASATPAQASLMLGTA 709

Query: 669  RHIA--ERWLAESEGERWLTDYLHISELLQQATREIDSDQ------GLLRFLTQAMADAA 720
            + +A    WL        L+      ++L +  + + + Q       L   LTQ++A   
Sbjct: 710  QRLALYRGWLLSLPPHDALSALYDHGDVLARFAQAVPASQRAAVLAQLRDLLTQSLAQDG 769

Query: 721  QGLGGSDEQIQRLES---------ERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGK 771
                     ++ L++             V+++TIH +KGLE   V    +M   +S   +
Sbjct: 770  GRFLTPYRFVRALKAGGIKATAVQTPGAVRLLTIHGAKGLEAHTV----LMLDTDSGSAR 825

Query: 772  YYDAESATTWVDLTGNE--------------------EALAKADQERLAEDLRLLYVALT 811
                ES    V+  G +                    +AL +  Q R  E+L  LYVALT
Sbjct: 826  ---PESMGVLVEWPGEDPLPRRFVFLASEKSPPACAVDALQQEQQARSLEELNALYVALT 882

Query: 812  RAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQEGGIADLQQALLKQCENLPDV- 870
            RA     + I+       S     A    +   L+        D ++ L     +LP + 
Sbjct: 883  RA--ESRLVISSFEPHKRSATTWYARLQPLASPLEAPSPAVGLDGERLLENPTFDLPSLP 940

Query: 871  ---VQCPPPKRFEQAYQPPQLDERELTARELSQAIDR--RWRVTSYSGLVMQSSHARHDP 925
               V   P    E+A  PP +D+   TA  +  A+ R   WR T   G      H++   
Sbjct: 941  ALTVALSPAVDAEKA--PPPVDD---TANRIGLALHRLLEWRPTPAQGFDWAPEHSQAVA 995

Query: 926  LQELPLLEVGGFDLDSAQERDGAAL 950
             +         F LD  Q RD  A+
Sbjct: 996  RE---------FALDPTQARDVLAM 1011



 Score = 43.1 bits (100), Expect = 1e-07
 Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 15/77 (19%)

Query: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84
           +EA AG GKT+ +    LR +L  GCA            IL +TFT+ A  E+RDR+   
Sbjct: 31  VEACAGAGKTWMLVSRILRALL-DGCAP---------QDILAITFTKKAAGEMRDRL--- 77

Query: 85  LHDARLAFARGASDDPL 101
             +A L    G SDD L
Sbjct: 78  --NAELRRWAGLSDDAL 92