Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1181 a.a., Exodeoxyribonuclease V beta chain (EC 3.1.11.5) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1015 bits (2625), Expect = 0.0
 Identities = 574/1203 (47%), Positives = 774/1203 (64%), Gaps = 34/1203 (2%)

Query: 6    NKLAVTLDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQIL 65
            N +A TLD LR PL G RLIEASAGTGKT+TIA LYLRL+LG G        PL+V+++L
Sbjct: 2    NDVAETLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLG-GSAAFPRPLTVEELL 60

Query: 66   VVTFTEAATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQ 125
            VVTFTEAAT ELR RIR  +H+ R+A  R ++D+PL   LL E +D   A   LL AERQ
Sbjct: 61   VVTFTEAATEELRGRIRSNIHELRIACLRESTDNPLYARLLEEISDKKQAAQWLLLAERQ 120

Query: 126  MDEAAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPISLA 185
            MDEAA+FTIHGFCQRML+ NAFESG  FE + + DES L+ Q  AD+WRR  YPLP  +A
Sbjct: 121  MDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRDIA 180

Query: 186  SEVRRLWPAPSALLAEIAGYLSGP-PVKLTTPLMEGDLAALQQAQIARICEIKQHWLVER 244
              V  +W  P ALL +I  YL G  PV    P  E  LA+  +  +ARI ++KQ W    
Sbjct: 181  QVVFDVWKGPKALLKDIDRYLQGEAPVIKAPPSQEETLASRHEQILARINQVKQQWCEAV 240

Query: 245  EEIEPAV--TGSDLHKNSQNALLRRLPILDAWAQSETHDLHVPSELEEFTQSGLLAKSKK 302
             E++  +  +G D  K ++    + +  + AWAQ ET +  +P  L +F+Q  L  ++K 
Sbjct: 241  SELDALIESSGIDRRKFNRGNQAKWIEKITAWAQEETKNYQLPEALGKFSQRFLAERTKA 300

Query: 303  GN-PPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSA 361
            G   PQ  LF  I+  L EP+S+K  +L  A+   R  +A+ K     L FDD+L++L  
Sbjct: 301  GGVTPQHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDT 360

Query: 362  ALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIY 421
            AL ++    L   IRT +PVAMIDEFQDTDP QY IF R++   P   LL+IGDPKQAIY
Sbjct: 361  ALRSESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWRHQPDTALLLIGDPKQAIY 420

Query: 422  AFRGADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481
            AFRGADIFTY+KAR++V+AHYTL TNWRS+  MV +VN++FS     F++  DIPF PV 
Sbjct: 421  AFRGADIFTYMKARSEVSAHYTLDTNWRSAPGMVNSVNKLFSQMNDAFMFR-DIPFSPVK 479

Query: 482  ASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTASASGA 541
             +P      + +    QPA+T W  E   +     DY + MA+ CA QI+  L A  +G 
Sbjct: 480  FAPRNQSLQFKVNDAPQPAMTLWLME--GESCGSGDYQSYMAQVCATQIRDWLRAGQTGD 537

Query: 542  ATFHRGEA---IEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDIE 598
            A    G++   + A D++VLVR+  EA ++RDAL+   I SVYLSNRDSVF +  AQ++ 
Sbjct: 538  ALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLLAIPSVYLSNRDSVFETLEAQEML 597

Query: 599  RLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERGV 658
             +L AV  PE E  LR+A+A+++  LTA +++ LNNDEN W+ ++ EF  YR++W +RGV
Sbjct: 598  WVLQAVMAPERENTLRSALATSMMGLTALDIETLNNDENAWDAVVEEFDGYRQIWHKRGV 657

Query: 659  LPMLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREIDSDQGLLRFLTQAMAD 718
            +PMLRA+++ R+IAE  LA + GER LTD LHISELLQ+A  +++S+  L+R+L Q + +
Sbjct: 658  MPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGSQLESEHALVRWLAQHILE 717

Query: 719  AAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESA 778
                   S +Q+ RLES++ LVQIVTIHKSKGLEYPLV+LPF+  +R   +  Y+D  S 
Sbjct: 718  PDS--NASSQQL-RLESDKHLVQIVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDRHSY 774

Query: 779  TTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAPL-RNGNSSQEPTSAH 837
               +DL+  EE++A A+ ERLAEDLRLLYVALTRAV+ C +G+APL R  +  +  T  H
Sbjct: 775  EAVLDLSHAEESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVH 834

Query: 838  RSAMGFLLQDGQEGGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARE 897
            +SA+G LLQ G+    A L+  +   C+   D+V   P       +Q       EL+AR 
Sbjct: 835  QSALGRLLQKGEPMDAAGLRACIEALCDE--DIVCRTPGNTDNDRWQIAAASHAELSARA 892

Query: 898  LSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSI 957
            L + +   WRVTSYSGL  +      D +  L        D+D+A    G A E+   + 
Sbjct: 893  LQRLLYDSWRVTSYSGLQQRGHSVAQDLIPRL--------DIDAAGV--GEAAEAPAMTP 942

Query: 958  FNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILELMESEQIESEWLPVLQQLVDTVL 1017
             +FPRGA PGTFLHSLFEE+DF Q      N + + E +E    E+ W PVL + +DTVL
Sbjct: 943  HHFPRGASPGTFLHSLFEELDFTQPI----NPQWVQEKLELSGFETRWEPVLTRWLDTVL 998

Query: 1018 STPLDGKALRLQQIMAAQRLTELEFLLPI-EVLDAPTLNRITQRHDPLSAHAGDLGFHAV 1076
              PL+   + L  +   ++  E+EF LPI + L A  L+ + +R+DPLSA    L F  V
Sbjct: 999  HVPLNETGVSLSVLTEREKQVEMEFYLPIAQPLTAGELDALIRRYDPLSAGCPALDFMQV 1058

Query: 1077 QGMLKGFIDLVFQYQGRYYVLDWKSNHLGDDPAAYHPQRLGSAMAEHRYDLQYQIYALAL 1136
            +GMLKGFIDLVF+Y+GRYY+LD+KSN LG+D AAY    + +AM  HRYDLQYQ+Y LAL
Sbjct: 1059 RGMLKGFIDLVFRYEGRYYLLDYKSNWLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLAL 1118

Query: 1137 HRFLRSRLAHYNYEQHFGGVFYLFLRGMDG-RGDQGVFHTKPSLALLDELDGLIAGRELA 1195
            HR+LR R+ +Y+YE+HFGGV YLFLRG+DG R  QG+F T+P+ AL+++LD + AG E++
Sbjct: 1119 HRYLRHRMTNYDYERHFGGVIYLFLRGVDGERPQQGIFTTRPAAALINQLDDMFAG-EMS 1177

Query: 1196 QRA 1198
            + A
Sbjct: 1178 EEA 1180