Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., DNA helicase and single-stranded DNA-dependent ATPase (NCBI) from Escherichia coli BW25113

 Score = 63.5 bits (153), Expect = 5e-14
 Identities = 111/510 (21%), Positives = 190/510 (37%), Gaps = 133/510 (26%)

Query: 350 LSFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCG 409
           L FDDL+   +  L  +E+  + +R +      ++DE+QDT+  QY +   L     +  
Sbjct: 181 LDFDDLILLPTLLLQRNEE--VRKRWQNKIRYLLVDEYQDTNTSQYELVKLLV--GSRAR 236

Query: 410 LLMIGDPKQAIYAFRGADIFTYIKARNQVNA--HYTLGTNWRSSAAMVAAVNQVFSSATH 467
             ++GD  Q+IY++RGA     +       A     L  N+RSS  ++ A N + ++  H
Sbjct: 237 FTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPH 296

Query: 468 PFIYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACA 527
            F                 +KR +S  G                      Y A++    A
Sbjct: 297 VF-----------------EKRLFSELG----------------------YGAELKVLSA 317

Query: 528 AQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDS 587
              +H            H     +  D A+L R  +++R+    L Q  I    +S   S
Sbjct: 318 NNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFLMQNRI-PYKISGGTS 376

Query: 588 VFASDVAQDIERLLLAVWQPEDE--------------------RLLRAAVASNLFALTAS 627
            F+    +D+   L  +  P+D+                    +L   A+  N    TAS
Sbjct: 377 FFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTAS 436

Query: 628 -ELDALNNDENEWEQLIAEFRQY----RRLWSERGVLPMLRAVLTQRHIAERWLAESEGE 682
            ++           + +  F  +    +RL +ER  +  +R ++      E WL E+   
Sbjct: 437 FDMGLSQTLSGRGYEALTRFTHWLAEIQRL-AEREPIAAVRDLIHGMDY-ESWLYETSPS 494

Query: 683 ---------------RWLTDYLHISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSD 727
                           W+T+ L  SEL +  T      Q + RF  + M +     G S+
Sbjct: 495 PKAAEMRMKNVNQLFSWMTEMLEGSELDEPMT----LTQVVTRFTLRDMMER----GESE 546

Query: 728 EQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESATTWVDLTGN 787
           E++ +       VQ++T+H SKGLE+P V+                          + G 
Sbjct: 547 EELDQ-------VQLMTLHASKGLEFPYVY--------------------------MVGM 573

Query: 788 EEAL----AKADQERLAEDLRLLYVALTRA 813
           EE      +  D++ + E+ RL YV +TRA
Sbjct: 574 EEGFLPHQSSIDEDNIDEERRLAYVGITRA 603



 Score = 34.3 bits (77), Expect = 4e-05
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 9/65 (13%)

Query: 21 GARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDR 80
          G  L+ A AG+GKT  I      L+ G G  + RH        I  VTFT  A  E+++R
Sbjct: 16 GPCLVLAGAGSGKTRVITNKIAHLIRGCG-YQARH--------IAAVTFTNKAAREMKER 66

Query: 81 IRRRL 85
          + + L
Sbjct: 67 VGQTL 71